Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq1 86.0 7e-12 >seq3 Length=13783801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || |||| | |||||||| || || ||||| |||||||| Sbjct 9225995 GTAGATGTTCGAAGTGTATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGA 9226054 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||| || ||||| |||||||| ||||||||||| |||| ||| Sbjct 9226055 AGCAGTTGGCATTGGAGCCATCAGAAGACTGTTGCGGATACC 9226096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 348/540 (64%), Gaps = 5/540 (1%) Strand=Plus/Plus Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||||| | | | ||| ||| || | |||||| || || || |||||||| | || | Sbjct 9227094 GACCATTCTTGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGG 9227153 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || ||||| | | ||| ||||||| || ||| ||| || | ||| || Sbjct 9227154 AACAGGTCTCTGGCACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCG 9227213 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC--CCG 110767 | |||||| | ||||||||| || || || | ||| | | ||| || || Sbjct 9227214 AAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCT 9227273 Query 110768 CCTGGTT-AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCG 110826 ||| | | |||||| || || || |||| |||| | ||||| || || | ||| | Sbjct 9227274 CCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTTA 9227333 Query 110827 GATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATA 110886 ||| ||||| || || || || | |||| ||||| | ||| | || | Sbjct 9227334 GATGTTCCATTAGTTCCAGCGATCACAGATCCAGTGGCGCGAATTTTGTGAACATTGAGT 9227393 Query 110887 CCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCA 110946 || || || || || | || ||| | ||||||| | | |||| | || || || Sbjct 9227394 CCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCCG 9227453 Query 110947 TCAATCGAATCTGC-CTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 ||| || ||| | || ||| || || ||||| ||||||||||||||||| || Sbjct 9227454 AGAATGGAGTCTTCACTCATTGTCAGA-AGGAAGCATGAAGACATCTGAGGACGGCATGT 9227512 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTA 111065 ||||| ||||||||| || || | |||||| | | || | |||||| || || Sbjct 9227513 TCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATA 9227572 Query 111066 TGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 || |||| |||||| | | ||| | || || || ||||| | ||| ||||| ||||| Sbjct 9227573 GGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACAT 9227632 >seq1 Length=15072434 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 158473 GGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTT 158532 |||| ||||| | || || ||||| || || |||||| ||||| | ||| | ||| Sbjct 9586808 GGATACTATGGAAGAGTTGCTCCTCGATCTGGACTGGCTGCCAAGCATTTCATCGATGTT 9586867 Query 158533 GGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCAT 158592 || || || ||||||||| || ||| |||||| |||||||| |||| |||||| Sbjct 9586868 GGAGCAGGTGTCATCGATAGCGACTATCGTGGAGAGGTCAAAGTTCTTCTTTTCAATTTC 9586927 Query 158593 GGAGACAAGGACTTTGAGGT 158612 || || || ||||||||||| Sbjct 9586928 GGCGAAAATGACTTTGAGGT 9586947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975948464600