Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq1 86.0 7e-12 >seq3 Length=13783801 Score = 127 bits (140), Expect = 2e-24 Identities = 678/1079 (63%), Gaps = 67/1079 (6%) Strand=Plus/Plus Query 105595 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTT 105654 ||||||||| || ||||||||||| | ||||| |||| | |||||| || | || Sbjct 9225656 ATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACC 9225715 Query 105655 GGACATCGTTGGACTTT-CCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGAC 105713 || | | | | | ||| ||||| || || | | ||| || |||||| | | Sbjct 9225716 GG-CGTAGCTTGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTC 9225774 Query 105714 CACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGA 105773 |||| | || ||||| ||||| | || || ||| |||||||||||||| || | Sbjct 9225775 CACGATCAGCAGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAA 9225834 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833 | | |||||| || ||| || | || |||||||| || || ||| | | Sbjct 9225835 GTTCCTTGATGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTG---TTGGCAA 9225891 Query 105834 TGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890 | ||| | |||||| || | | ||| | || | | | | ||| |||| | | Sbjct 9225892 TCAGACGATTCTTCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGT 9225951 Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGTCGTG 105949 | || |||||| || ||||| | || | | ||| |||||||||| ||| Sbjct 9225952 GAGGATTCACAATCTGGAAATCTCCAGAAAGAACACGGCG-AGAGTAGATGTTCGAAGTG 9226010 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || || | | ||||||| || || | ||||| || ||||| || ||||||||||| Sbjct 9226011 TATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGA 9226070 Query 106010 GCCATCAAAAGACTGTTACGAAGACCCT----------------TTTCCTT-GATGCG-- 106050 ||||||| ||||||||| || | ||| | ||| | ||| || Sbjct 9226071 GCCATCAGAAGACTGTTGCGGATACCATGCCTGTAAATAAGTAGTTTAATCAGATTCGAA 9226130 Query 106051 --------------------------TTCCTTGAGAACAT---CCCAGTCGTAGTTGAGC 106081 || |||| ||| | |||| ||| | |||| | Sbjct 9226131 AGAGTATTTTAATCTTACTTTGCAATTTTCTTGCGAAGAGTGGCCCAATCGCA-TTGATC 9226189 Query 106082 --TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 |||| | || | |||||||||||||||||||| |||| || ||||| || | Sbjct 9226190 GGTTGGAGTGAC-TCCCCACATATCAAATTGAAGCTGTCCTTTCGATACTGGAGATCCTT 9226248 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 106199 | ||||| || | || | |||||||||||||| || || |||| | |||| Sbjct 9226249 CGTATGTCGAGTATGGTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAATGCAGCGT 9226308 Query 106200 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 106259 || |||||||| ||||| || || | || ||||||| | ||| |||| || Sbjct 9226309 AGTAGATGGTTTCGAAGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTGAATGGGT 9226368 Query 106260 AGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTC 106319 | || ||| || || ||| ||||| ||||| ||||| | || || || | || | Sbjct 9226369 AACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGGCGATGGC 9226428 Query 106320 GCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTA 106379 |||||||||| || || || ||| || ||||| | || |||||| | || | Sbjct 9226429 GCATATTAGAGTTGCGAGCCTCCTCGACTGGATAGTAGTTGACGTCAATAATCTTATTCA 9226488 Query 106380 GATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT 106439 |||| |||| | || || || | ||| ||||| | | || || | ||| Sbjct 9226489 AATTTCTGGTTATAACTTTAGTCACCTCAGCCAGTTTGACGAAGTCGAACTT---TTTCT 9226545 Query 106440 CTTCATTGACATA-CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 106498 | | || || | | | || || || || || | |||||||| || ||||||| Sbjct 9226546 CGGGGGTCACGTAGCGATTG-AGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTCATCT 9226604 Query 106499 TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTC 106558 | | | |||||||| ||||| || ||||||||||||| ||| || || || | ||| Sbjct 9226605 GGAGCAGAGTACTCTATGATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAGATTT 9226664 Query 106559 TTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 | |||||| ||| ||| ||||| |||||| ||||| || ||| ||||| Sbjct 9226665 TGCTGGTTAGACTTGCGATTGGCGGCATCTTTGTAGGTGATGTATGGAAGCCCGGTCTC 9226723 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/278 (69%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 168438 AGTTTTGTGAAAATGTACCTCGTCTGAGAAGCA---TCCTTACCACCCATGAGACGCGTA 168494 |||| ||||| ||||| | | |||| |||| ||||| |||||| |||||| ||| Sbjct 10143937 AGTTGAGTGAAGATGTAACGAG-CTGA--AGCACTGTCCTTTCCACCCTGGAGACGAGTA 10143993 Query 168495 CCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCC 168554 || ||||| || || ||| ||||| |||||||| || || ||| || | || Sbjct 10143994 CCGAATTGTCCGATTGGAAGAAGCAGGTTGATGTTGTTGGATCCAACGTAATCTTGAGCG 10144053 Query 168555 AACTTAACAATCGTGTCCGCTAAG-GATACTTCACCATGGTGGTACGCAGACTTGTCCGC 168613 | || ||||| || ||| |||| || ||| || || ||||||||||| | || || Sbjct 10144054 AGATTCACAATTGT-TCCCATAAGCGACTGTTCTCCGTGATGGTACGCAGAAATATCAGC 10144112 Query 168614 GACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCT-TATGGAAGCAAG 168672 |||| | | |||| ||| || || || | |||| |||| | || | | |||||| | Sbjct 10144113 GACAGCTCCAGCCAATTGAGCTACGTTGACCTCATGCTTG-TCTGCTCTTTTGAAGCACG 10144171 Query 168673 CATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCC 168710 || | | || |||| |||| ||| ||| ||||||| Sbjct 10144172 CAAAGAGAACCTTCCGCTGTCCTGGCCTGAAACCATCC 10144209 >seq1 Length=15072434 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| | ||||| || ||||| || || |||| |||||| || | ||||| || Sbjct 9586814 TATGGAAGAGTTGCTCCTCGATCTGGACTGGCTGCCAAGCATTTCATCGATGTTGGAGCA 9586873 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||| || ||| ||||||| || || |||||||| |||| |||||| ||| || Sbjct 9586874 GGTGTCATCGATAGCGACTATCGTGGAGAGGTCAAAGTTCTTCTTTTCAATTTCGGCGAA 9586933 Query 155164 AAAGACTTTGAGGTA 155178 || |||||||||||| Sbjct 9586934 AATGACTTTGAGGTA 9586948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980748376680