Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 132 6e-26 >seq2 Length=15279421 Score = 132 bits (146), Expect = 6e-26 Identities = 261/386 (68%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 ||| | || ||| ||| ||||||||||||||||| || |||| ||||| ||| Sbjct 6053004 TGTCTCATTCCAACGTCTGCACATGGAACTAATCCAGCATCTGCTCAAATGGCTAATATG 6053063 Query 154779 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAG 154838 || ||||| | || | | ||| || | || ||||| || ||| ||||| | Sbjct 6053064 AAGGTTGTTGTCGTGGACTCAGATCATCACGGAAACATCAACTACAAGGATCTGGCAGCT 6053123 Query 154839 AAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACAT 154898 ||||| | | | || | || || || ||||||| | || || ||||| || ||| Sbjct 6053124 AAAGCTGAGAAGTACTCAAATCAATTGGCAGCTATTATGGTCACTTATCCATCGACTCAT 6053183 Query 154899 GGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAG 154958 || |||||||| | ||| | | | ||| | | |||||||| ||||||| || Sbjct 6053184 GGAGTATTTGAGTCATCGATTCGTGATGTTTGTGACAAAGTTCATGAGCATGGTGGACAA 6053243 Query 154959 GTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTAT 155018 || |||||||||||||| ||| | ||||| || || ||| | ||| | || || Sbjct 6053244 GTTTATCTTGATGGAGCCAATATGAATGCTCAAGTTGGATTGTGTCGTCCAGGAGACTAC 6053303 Query 155019 GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGA 155078 || ||||| | ||| | ||| | || || ||||||||||||||||| ||||| || Sbjct 6053304 GGGAGTGATGTGTCGCATTTGAACCTTCACAAGACATTCTGTATTCCACACGGAGGAGGT 6053363 Query 155079 GGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || || || || || || Sbjct 6053364 GGTCCAGGTGTTGGACCAATTGGAGT 6053389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212749318880