Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 >seq2 Length=15279421 Score = 150 bits (166), Expect = 2e-31 Identities = 265/386 (69%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 ||| | || ||| ||| ||||||||||||||||| ||||| || ||||| ||| Sbjct 6053004 TGTCTCATTCCAACGTCTGCACATGGAACTAATCCAGCATCTGCTCAAATGGCTAATATG 6053063 Query 159454 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAG 159513 || ||||| | || | | ||| || | || ||||| || ||| ||||| | Sbjct 6053064 AAGGTTGTTGTCGTGGACTCAGATCATCACGGAAACATCAACTACAAGGATCTGGCAGCT 6053123 Query 159514 AAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACAT 159573 ||||| | | | || | || || || ||||||| | || |||||||| || ||| Sbjct 6053124 AAAGCTGAGAAGTACTCAAATCAATTGGCAGCTATTATGGTCACTTATCCATCGACTCAT 6053183 Query 159574 GGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAG 159633 || |||||||| || || | | | ||| | | ||||||||| ||||||| || Sbjct 6053184 GGAGTATTTGAGTCATCGATTCGTGATGTTTGTGACAAAGTTCATGAGCATGGTGGACAA 6053243 Query 159634 GTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT 159693 || ||||||||||| || ||| | ||||| || || || | ||| | ||||| Sbjct 6053244 GTTTATCTTGATGGAGCCAATATGAATGCTCAAGTTGGATTGTGTCGTCCAGGAGACTAC 6053303 Query 159694 GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGA 159753 || ||||| | ||| | ||| | || |||||||||||||||||||| ||||| || Sbjct 6053304 GGGAGTGATGTGTCGCATTTGAACCTTCACAAGACATTCTGTATTCCACACGGAGGAGGT 6053363 Query 159754 GGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || || || ||||| || Sbjct 6053364 GGTCCAGGTGTTGGACCAATTGGAGT 6053389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051148545520