Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 >seq3 Length=13783801 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||| || |||||||||| ||||| | ||||| ||||| ||| Sbjct 5942208 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTCGAGTTGC 5942149 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || ||||| ||||| || || ||||| |||||||| || || Sbjct 5942148 TTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 5942089 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||| ||||| ||| ||| || ||||| |||| |||||||| ||| Sbjct 5942088 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTTTCCGGTC 5942029 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 ||||| || ||||| | |||||| Sbjct 5942028 AAAGTCTTGACGAAGATCTGCATT 5942005 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || || || || ||||| || | ||| || | || |||||||||||| Sbjct 5942436 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCGAGCTGC 5942377 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| || ||||| || ||||||||||| ||||| ||||| ||||| || Sbjct 5942376 TTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGAATCTTG 5942317 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| |||||||| ||||| || || ||| ||||| ||||| | |||||||| | Sbjct 5942316 GCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGATA 5942257 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | ||||||| Sbjct 5942256 AGAGTCTTGACGAAGATTTGCATT 5942233 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || || || || ||||| || | ||| || | || || ||||||||| Sbjct 5941699 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 5941640 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||||||||||| ||| || ||||| || || |||||||| |||||||| || Sbjct 5941639 TTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTA 5941580 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || || ||||| ||| ||| |||||||| || | |||||||| ||| Sbjct 5941579 GCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5941520 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 5941519 AATGTCTTGACGAAGATCTGCAT 5941497 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| ||||| || |||||||||| ||||| | ||||| || Sbjct 5943681 AACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTC 5943622 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| | ||||| || ||||| || || || || || || || Sbjct 5943621 GAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTG 5943562 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||||| |||||||||||||||||| ||| || || || || | || || Sbjct 5943561 GATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTT 5943502 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || ||||| | ||||| Sbjct 5943501 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || |||||||| || | ||| || | ||||| ||||| ||| Sbjct 5942940 TGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGC 5942881 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | ||||| || ||||| || || |||||||||||||| || || Sbjct 5942880 TTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 5942821 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||| ||||| ||| |||||| || || || | ||||||||||| Sbjct 5942820 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTTTCCTGTA 5942761 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 5942760 AGAGTCTTGACGAAGATCTGCATT 5942737 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||| || ||||| |||| || || | || |||||||| || Sbjct 5943168 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGT 5943109 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| |||| || || ||||| || || ||||| ||||||||||| || Sbjct 5943108 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTG 5943049 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || ||||| ||||| || || ||| |||||||| || | |||||||| ||| Sbjct 5943048 GCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5942989 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 5942988 AATGTCTTGACGAAGATCTGCAT 5942966 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| || || || || || ||||| || | || || | || || || Sbjct 5941200 AACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 5941141 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 5941140 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 5941081 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| || || ||||| || ||| ||||| || ||||| | || || Sbjct 5941080 GATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTT 5941021 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| ||||| ||||| | |||||| Sbjct 5941020 TCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || |||||||| || || || ||||| || || || || ||||||||||| || Sbjct 5941360 TACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGG 5941301 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||||||| || ||||| ||| ||| |||||||| || | |||||||| |||| Sbjct 5941300 CCTTGACGTTCTCGATCGTGTCGGAAGCTTCAACTTCAAGTGTGATGGTCTTTCCAGTCA 5941241 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 |||| || || || | |||||| Sbjct 5941240 AAGTCTTGACAAAGATCTGCATT 5941218 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | || ||| || ||||| || || || || |||||||| || || Sbjct 12978380 TACCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGG 12978439 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| ||||||||||| || ||| || ||||| ||||||| ||||| || |||| Sbjct 12978440 CCTTGACATTCTCAATGGTATCGGAAGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCA 12978499 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | |||||| Sbjct 12978500 GAGTCTTGACGAAGATTTGCAT 12978521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481500493369