Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 116 2e-21 >seq3 Length=13783801 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | |||||| |||| || ||| ||||| ||||| ||||||||| Sbjct 5942460 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5942401 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || ||||| ||||| || || || || |||||||| ||| | || Sbjct 5942400 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGA 5942341 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| || ||| | || | || ||| || || Sbjct 5942340 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACT 5942281 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| ||||| | |||||||| || ||||| ||||| Sbjct 5942280 TCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCAT 5942234 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | |||||| |||| || ||| ||||| ||||| ||||||||| Sbjct 5941723 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5941664 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || ||||| |||||||| || || |||| |||||| ||| | || Sbjct 5941663 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGG 5941604 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| ||||| | | |||| || || || || Sbjct 5941603 ATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACT 5941544 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| ||||| || | ||||| || |||||||||||| Sbjct 5941543 TCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCATA 5941496 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||||| || ||| ||||| ||||| ||||| | Sbjct 5941219 TTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAG 5941160 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | || | || || ||||| |||||||| || || || || ||||| ||| | | Sbjct 5941159 ACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTG 5941100 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| |||||| | | || | || ||||| | Sbjct 5941099 GAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCA 5941040 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 5941039 CCTCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || |||||||||||| | || |||| || || || |||||||| || Sbjct 5942929 TTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAA 5942870 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||| ||| | || | || || ||||| ||||| || ||| Sbjct 5942869 GATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTCACGTT 5942810 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| || || || |||| || ||||| ||||| || |||||||| || Sbjct 5942809 CTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTTTCCTGTAAGAGTCTTGAC 5942750 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 5942749 GAAGATCTGCAT 5942738 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||| | | |||||| |||| || || || || ||||| ||||| || Sbjct 5943192 CCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 5943133 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || || ||||||||||| || || |||| ||||| ||| | || Sbjct 5943132 AGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 5943073 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| |||||| || || || || || | ||| ||| || | Sbjct 5943072 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCAC--ATTCTCGATGGTATCAGAGGCTTCGA 5943015 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || ||||| ||||| || | ||||| || |||||||||||| Sbjct 5943014 CTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCATA 5942965 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || || || || | ||| |||| || ||||| ||||| ||||| Sbjct 5943662 TCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAG 5943603 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||||| ||| | || | |||||||| || || || |||||| || Sbjct 5943602 ATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGATTTTGGCTTTGAC--AT 5943545 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || || || |||| || ||||||||||| || | |||||| | Sbjct 5943544 TCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGA 5943485 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 5943484 CGAAGATCTGCATA 5943471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633572304696