Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=15072434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 104972 GGATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 |||||| | ||| ||||||| ||| | |||||| |||||||||||||||||||||| Sbjct 5138674 GGATTTACGTCTCGTGAAGAAGGAGATCTTGGACCAGTTTATGGATTTCAATGGAGACAC 5138733 Query 105032 GCTGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTA 105091 ||| || ||||| | || ||| |||| || || | || |||||| | || || || Sbjct 5138734 TTTGGGGCGAAATATGTGGATTGTCATACAGATTACTCTGGACAAGGTGTTGATCAGTTG 5138793 Query 105092 AGTCAAGTTAT-AGAAACTATAAAAAATAACCCCGGGT-GTCGAAGAATAATTATAGATA 105149 | ||||||| || | ||| | || |||| | |||||||||| ||||| Sbjct 5138794 GCTGAAGTTATCCGACAGATTAAGGAGCAA--CCGGATAGTCGAAGAATCATTATGTCCG 5138851 Query 105150 GTTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCA 105195 |||||| ||| | | | | |||| ||| ||||||||||| Sbjct 5138852 CGTGGAATCCGTCGGATCTTGGACAAATGGTTCTGCCACCGTGTCA 5138897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658403142389720