Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 176 5e-39 seq6 102 9e-17 seq4 93.3 5e-14 >seq3 Length=13783801 Score = 176 bits (194), Expect = 5e-39 Identities = 435/658 (66%), Gaps = 4/658 (1%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || ||||||||| || |||||||| ||||| || | ||| || | |||| ||||| Sbjct 9227067 CCTGGACATTCACATGGGCACATCAACGACCATTCTTGATCCTTCTCGACTCGCTTCATA 9227126 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | |||||| ||||||||||| | || | || || | | | ||||| ||| Sbjct 9227127 AAGAGATCTGGAATCCAAAGAGCAAGGAACAGGTCTCTGGCACGTTCCTCTTCCGGTCCA 9227186 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | ||| | || | ||| || | ||||| || |||||||| || | || || Sbjct 9227187 GTGTTCTTGCGGAGAGATACAAACTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATA 9227246 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | | ||||| ||||| || ||||||||||| | ||| | |||||||| || || Sbjct 9227247 GCAAATGCTCCTGGGCGTTTGTTTCCTCCTTGATCAACATAACGAGCAGTATTATTGTAG 9227306 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | | |||||| | | || || ||| | ||||| ||||| | || | |||| Sbjct 9227307 ACACGAAGCATTGGTATGAGTCCGTTAGATGTTCCATTAGTTCCAGCGATCACAGATCCA 9227366 Query 48456 CTAGCTCTTATATTACTA--ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | || | || || | |||| | || || || || || |||| || || |||| Sbjct 9227367 GTGGCGCGAATTTTGTGAACATTG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAG 9227424 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 ||||| | || | ||||| || ||||| || || || |||| | | || | Sbjct 9227425 CACACTGCTTCAATGTATCGTAGATTCCGAGAATGGAGTCTTCACTCATTGTCAGAAGGA 9227484 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | || |||||| || ||| | || ||||| ||||| || | ||||| || ||||| Sbjct 9227485 AGCATGAAGACATCTGAGGACGGCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGG 9227544 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 | | | ||| || | || ||||| || || || | ||| ||||| | || Sbjct 9227545 TCATGTAACGCTCCGACATCAGATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCAT 9227604 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 | || || ||||| |||||||| ||||| | || || | || ||||| | || |||| Sbjct 9227605 GGATTCCAATAGAAACACGCATCAACATCTGCTGTGGGCGCTCGACAATCTCCTTGTTTA 9227664 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || | ||| || || |||| |||||| || || |||||| |||| ||| |||| Sbjct 9227665 TCTTGAGAAGGTAGGAACGCTCCAGTGTTTTGAATCCGAAATAGGTGTAGGAATAGTC 9227722 Score = 132 bits (146), Expect = 5e-26 Identities = 307/461 (67%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || |||||||| || | || || ||| |||| || || || ||||| ||||| ||| Sbjct 9225609 TTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACATTCCA 9225668 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||| | || ||||||| ||||||||||| || | | || || || Sbjct 9225669 GTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCTTGGC 9225728 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 | | || ||||| ||||||||||| |||||||| |||| || | |||||| ||| Sbjct 9225729 TTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGCAGCC 9225788 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || || | ||| | |||| | |||||||| ||||| ||||| || || ||||| Sbjct 9225789 ATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGATGTCG 9225848 Query 47214 TCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 ||| | || | | |||||||| ||||| ||| | || | || || | Sbjct 9225849 GATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCTTCATC 9225908 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330 |||| | ||| | | || ||| || || | | |||||||| ||||| || Sbjct 9225909 TCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAATCTGG 9225968 Query 47331 AATTCTCCAGATAGTACTCTACGGCTA---TATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || || ||||| | || || || || ||||| || || ||| Sbjct 9225969 AAATCTCCAGAAAGAAC---ACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGGAT 9226025 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| ||||| | |||||||||||| || || || ||||| Sbjct 9226026 TCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCAT 9226066 Score = 93.3 bits (102), Expect = 5e-14 Identities = 233/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| ||| ||| || || ||||||| ||| | || || | |||||| || ||||| Sbjct 4093964 TCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATCGAAGCG 4094023 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 ||||||||| ||||| || || || || ||||| ||||||| |||||||| | | Sbjct 4094024 AATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCAGCGAAC 4094083 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTA-CACATGG 19181 ||| | || | |||||| || ||||| ||||||||||| || | | | | Sbjct 4094084 GAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATGAACTCG 4094143 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCT-CATCTGTATCTTTAACATATGCAT 19240 | | || | | || || ||| | || | | ||| ||| || ||| | Sbjct 4094144 AACT-CATCAACGGCGTTGAAAAGAGTGTTTCGTTCCGTCT-CATCACGAATATAAG--- 4094198 Query 19241 CTATCAATAAACT----GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCG 19296 | ||||| | || |||||| ||||||||||| || || || || ||||| |||||| Sbjct 4094199 -TCTCAATCAGCTTCGAGTACATCTCTGAATGAATGTTCTCAATGGCAATCTGGAATCCG 4094257 Query 19297 TAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || ||| | | |||||||| | || ||||| | | |||| |||| Sbjct 4094258 TAGAAAAACCGTGCTTCTGAGACTTGAACTTCGTTCGAGAATCGTTCG 4094305 >seq6 Length=17718942 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||||| ||| | |||||| || || || || |||||||||| |||||| || Sbjct 1430812 TTTGATATTCGGAAACGCGTTTTTCGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTT 1430753 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 ||||||||||||| || |||||| || || ||| | | || || ||| || | Sbjct 1430752 CCATAAAATCAAACGGGTTTTTTGTGTTGTAGCGTTTGGAGTAACCCAACTCTTCAAGCA 1430693 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | ||| || ||||||| || |||| | |||||| | ||||||||| || || | Sbjct 1430692 GAAGATCAGCGACAAATTCAACATATTTACACATCATGTGCTGATTCATTCCAATCAAGT 1430633 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTC 18884 | || || | ||| || ||| |||||||| Sbjct 1430632 TTGTGGGCAGGGATTCTCGAACAAAATCTTGTTC 1430599 >seq4 Length=17493829 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||||| ||| | ||||| || || || || |||||||||| |||||| || Sbjct 6253105 TTTGATATTCGGAAACGCGTTTTTAGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTT 6253046 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 ||||||||||||| | |||||| || || ||| | | || || ||| || | Sbjct 6253045 CCATAAAATCAAACAGGTTTTTTGTGTTGTAGCGTTTGGAGTAACCCAACTCTTCAAGCA 6252986 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | ||| || ||||||| || |||| | |||||| | ||||||||| || || | Sbjct 6252985 GAAGATCAGCGACAAATTCAACATATTTACACATCATGTGCTGATTCATTCCAATCAAGT 6252926 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTC 18884 | || || | ||| || ||| |||||||| Sbjct 6252925 TTGTGGGCAGGGATTCTCGAACAAAATCTTGTTC 6252892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108750815480