Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 241 1e-57 seq1 190 2e-42 seq6 111 1e-18 seq5 109 4e-18 seq4 96.9 3e-14 seq3 96.9 3e-14 >seq2 Length=15279421 Score = 241 bits (266), Expect = 1e-57 Identities = 481/706 (68%), Gaps = 10/706 (1%) Strand=Plus/Minus Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACC 551960 || ||||| |||||||||| ||| | ||||| || | |||||| | | || | Sbjct 11758366 CGACGTCTCCGAACTGCTTGTGAACGTGCCAAGAGAACACTTTCAAGTTCATCGGAAGCA 11758307 Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGAT-TATAATACGCCTATTTCGAGGGC 552019 | ||||||| |||||| | ||||| ||||||||| ||| || || | | || Sbjct 11758306 TGTGTTGAAGTTGATTCACTGTTTGAAGGAATTGATCTATGC-ACAAAGATCACTCGTGC 11758248 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 || ||||| | ||| ||||||| || | ||||| | |||||||| || | | Sbjct 11758247 TCGTTTCGAAGAACTGTGTGCTGATCTATTCCGGAAAACTCTGGAACCAGTTGAGAAGGC 11758188 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| | || |||| ||||| || | ||||| ||||| | || || ||||| Sbjct 11758187 TCTTCGAGATGCTAAACTTGACAAATCAAAGATCGATGAAGTTGTGTTGGTCGGAGGATC 11758128 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | |||| ||||||| || || | || ||| || |||||| || |||| | Sbjct 11758127 CACTCGTGTTCCGAAAATTCAAAAATTGCTGAAAGACTTCTT-CAATGGAAAGGAATTGA 11758069 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 | | ||||||||||| || ||||| | |||||| ||| ||||||||||| | | Sbjct 11758068 ACTGCTCCATCAATCCAGATGAAGCAGTTGCATTTGGTGCTGCAGTTCAAGCAGCTGTAC 11758009 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 ||||||| | ||||||| | | | || | | || || |||||| |||| | Sbjct 11758008 TTTCTGGTGTCAAGGATGAAACAATCAAGGATGTGTTGCTGGTTGATGTTGCTCCATTGA 11757949 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 ||||| | ||||||| ||||||| | ||||| ||||| || ||| |||| ||| | Sbjct 11757948 GCCTTGGAATTGAAACAGCTGGAGGTGTGATGACCAATCTGATTGATCGAAACACTCGAA 11757889 Query 552379 TTCCTTGTAAAAAATCTCGTGTA---TTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 |||| | |||| | | | || |||| ||| | || |||||| | | ||| Sbjct 11757888 TTCCA---ACAAAAGCCTGCAAAACATTCACTACATATGCTGACAATCAACCAGGTGTCT 11757832 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 |||||||| | | |||||| ||| | | | ||| || ||| ||| ||||| || | Sbjct 11757831 CAATTCAAGTGTATGAAGGTGAACGTGCAATGACTCGTGACAATCATCGCCTTGGAACAT 11757772 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 | | || || ||||| |||||||| || || || || ||||||||||| ||||| | Sbjct 11757771 TCGAATTGTCTGGAATTCCACCTGCTCCACGCGGTGTTCCACAAATTGAAGTCACTTTTG 11757712 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||| ||||| ||||||||| | |||||| | ||| |||||||| Sbjct 11757711 ATATTGATGCAAATGGAATTCTCAATGTGTCAGCTGAGGATAAATC 11757666 Score = 241 bits (266), Expect = 1e-57 Identities = 481/706 (68%), Gaps = 10/706 (1%) Strand=Plus/Plus Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACC 551960 || ||||| |||||||||| ||| | ||||| || | |||||| | | || | Sbjct 11760597 CGACGTCTCCGAACTGCTTGTGAACGTGCCAAGAGAACACTTTCAAGTTCATCGGAAGCA 11760656 Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGAT-TATAATACGCCTATTTCGAGGGC 552019 | ||||||| |||||| | ||||| ||||||||| ||| || || | | || Sbjct 11760657 TGTGTTGAAGTTGATTCACTGTTTGAAGGAATTGATCTATGC-ACAAAGATCACTCGTGC 11760715 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 || ||||| | ||| ||||||| || | ||||| | |||||||| || | | Sbjct 11760716 TCGTTTCGAAGAACTGTGTGCTGATCTATTCCGGAAAACTCTGGAACCAGTTGAGAAGGC 11760775 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| | || |||| ||||| || | ||||| ||||| | || || ||||| Sbjct 11760776 TCTTCGAGATGCTAAACTTGACAAATCAAAGATCGATGAAGTTGTGTTGGTCGGAGGATC 11760835 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | |||| ||||||| || || | || ||| || |||||| || |||| | Sbjct 11760836 CACTCGTGTTCCGAAAATTCAAAAATTGCTGAAAGACTTCTT-CAATGGAAAGGAATTGA 11760894 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 | | ||||||||||| || ||||| | |||||| ||| ||||||||||| | | Sbjct 11760895 ACTGCTCCATCAATCCAGATGAAGCAGTTGCATTTGGTGCTGCAGTTCAAGCAGCTGTAC 11760954 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 ||||||| | ||||||| | | | || | | || || |||||| |||| | Sbjct 11760955 TTTCTGGTGTCAAGGATGAAACAATCAAGGATGTGTTGCTGGTTGATGTTGCTCCATTGA 11761014 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 ||||| | ||||||| ||||||| | ||||| ||||| || ||| |||| ||| | Sbjct 11761015 GCCTTGGAATTGAAACAGCTGGAGGTGTGATGACCAATCTGATTGATCGAAACACTCGAA 11761074 Query 552379 TTCCTTGTAAAAAATCTCGTGTA---TTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 |||| | |||| | | | || |||| ||| | || |||||| | | ||| Sbjct 11761075 TTCCA---ACAAAAGCCTGCAAAACATTCACTACATATGCTGACAATCAACCAGGTGTCT 11761131 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 |||||||| | | |||||| ||| | | | ||| || ||| ||| ||||| || | Sbjct 11761132 CAATTCAAGTGTATGAAGGTGAACGTGCAATGACTCGTGACAATCATCGCCTTGGAACAT 11761191 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 | | || || ||||| |||||||| || || || || ||||||||||| ||||| | Sbjct 11761192 TCGAATTGTCTGGAATTCCACCTGCTCCACGCGGTGTTCCACAAATTGAAGTCACTTTTG 11761251 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||| ||||| ||||||||| | |||||| | ||| |||||||| Sbjct 11761252 ATATTGATGCAAATGGAATTCTCAATGTGTCAGCTGAGGATAAATC 11761297 Score = 165 bits (182), Expect = 7e-35 Identities = 320/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| || | || |||||||| || || | ||||| || || ||| || ||||| | Sbjct 11759052 AAGGAAATAAGACAACTCCATCATACGTGGCATTCACAGATACGGAAAGATTGGTTGGAG 11758993 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 ||||||||||| ||||||| || ||||||| ||||| | |||||||| ||| | | Sbjct 11758992 ATGCAGCAAAAGATCAAGCAGCTCGTAATCCAGAGAATACAGTATTTGATGCAAAAAGAT 11758933 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 | |||||| || |||| |||| || || ||||| |||| ||||||||||| || Sbjct 11758932 TGATTGGACGACGTTTCGATGAATCAACAGTTCAATCAGACTGTAAGCATTGGCCATTTG 11758873 Query 550254 AAATTGTTAATGTTTCT---GGAAAACCTTATATTGAAGCT--ACTCATGAAGGATCTGT 550308 | || || | |||||||| ||||||| | | | | ||||| Sbjct 11758872 GA---GTGAAAGGAAAACAAGGAAAACCAGTGATTGAAGTTGAAGTGA--AAGGAGAAAA 11758818 Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368 | ||||| |||||| | || || | ||||| | || ||||| ||||||| Sbjct 11758817 GAGGCAATTCAATCCAGAAGAGATCTCTGCAATGGTACTCCAAAAGATGAAGGAAACAGC 11758758 Query 550369 CAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | || || || | |||||||| || || || || ||||| || || Sbjct 11758757 TGAGACTTATCTCGGACATACCGTGAAAGATGCAGTTATCACAGTTCCTGCATACTTCAA 11758698 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || | ||||| || || ||||| | ||||||||||| |||| |||| Sbjct 11758697 TGATAGTCAGAGGCAAGCAACAAAGGATGCAGCTACCATTGCTGGACTCAATGCAATTCG 11758638 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 |||||||||||||| ||||||||||| |||||||||||| | |||||| Sbjct 11758637 AATTATCAATGAACCAACTGCTGCTGCTCTTGCATATGGATTGGATAAA 11758589 Score = 165 bits (182), Expect = 7e-35 Identities = 320/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Plus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| || | || |||||||| || || | ||||| || || ||| || ||||| | Sbjct 11759911 AAGGAAATAAGACAACTCCATCATACGTGGCATTCACAGATACGGAAAGATTGGTTGGAG 11759970 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 ||||||||||| ||||||| || ||||||| ||||| | |||||||| ||| | | Sbjct 11759971 ATGCAGCAAAAGATCAAGCAGCTCGTAATCCAGAGAATACAGTATTTGATGCAAAAAGAT 11760030 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 | |||||| || |||| |||| || || ||||| |||| ||||||||||| || Sbjct 11760031 TGATTGGACGACGTTTCGATGAATCAACAGTTCAATCAGACTGTAAGCATTGGCCATTTG 11760090 Query 550254 AAATTGTTAATGTTTCT---GGAAAACCTTATATTGAAGCT--ACTCATGAAGGATCTGT 550308 | || || | |||||||| ||||||| | | | | ||||| Sbjct 11760091 GA---GTGAAAGGAAAACAAGGAAAACCAGTGATTGAAGTTGAAGTGA--AAGGAGAAAA 11760145 Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368 | ||||| |||||| | || || | ||||| | || ||||| ||||||| Sbjct 11760146 GAGGCAATTCAATCCAGAAGAGATCTCTGCAATGGTACTCCAAAAGATGAAGGAAACAGC 11760205 Query 550369 CAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | || || || | |||||||| || || || || ||||| || || Sbjct 11760206 TGAGACTTATCTCGGACATACCGTGAAAGATGCAGTTATCACAGTTCCTGCATACTTCAA 11760265 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || | ||||| || || ||||| | ||||||||||| |||| |||| Sbjct 11760266 TGATAGTCAGAGGCAAGCAACAAAGGATGCAGCTACCATTGCTGGACTCAATGCAATTCG 11760325 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 |||||||||||||| ||||||||||| |||||||||||| | |||||| Sbjct 11760326 AATTATCAATGAACCAACTGCTGCTGCTCTTGCATATGGATTGGATAAA 11760374 >seq1 Length=15072434 Score = 190 bits (210), Expect = 2e-42 Identities = 282/396 (71%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 |||||||||| || || || |||| |||||| || ||||||||||| | ||||||||| Sbjct 9321253 TTAATCCAGACGAAGCAGTAGCCTTTGGTGCAGCCGTTCAAGCAGCTGTACTTTCTGGAG 9321194 Query 552268 AAACTGATGAAAAACTA-CAA-AATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 || |||| | |||| ||| || || |||| || |||||| || ||| || ||| Sbjct 9321193 TAAAAGATG--ATACTATCAAGGATGTTTTACTCGTTGATGTTGTCCCACTAAGTCATGG 9321136 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | ||||||| |||||| | ||||| ||| | || |||||||| |||| |||||| Sbjct 9321135 AATTGAAACAGCTGGAGGAGTAATGACCAATTTGATTGATAGAAACACTAGAATTCCTGC 9321076 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||| || |||| | |||||| |||| ||||| ||| ||| | |||||| | Sbjct 9321075 CAAAGCTTCCAAAACATTTACAACGTATGCAGACAATCAGCCTGGTGTCTCTATTCAAGT 9321016 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 | ||||||||| | | ||| ||||||| ||| ||||| || ||| | ||| Sbjct 9321015 ATACGAAGGAGAACGTGCTATGACTCGAGATAATCATCGTCTTGGAACATTTGAATTAAC 9320956 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || || || || ||||| || ||||| || ||| | || || || || ||||| ||||| Sbjct 9320955 TGGAATCCCACCAGCTCCACGAGGAGTTCCACAAGTCGATGTAACGTTTGATATTGATGC 9320896 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||||||| | ||||| | ||| |||||||| Sbjct 9320895 AAATGGAATTCTCAATGTATCAGCTGCCGATAAATC 9320860 Score = 176 bits (194), Expect = 4e-38 Identities = 325/472 (69%), Gaps = 16/472 (3%) Strand=Plus/Minus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| |||| ||||| || || || || |||| || || || || | ||||||| Sbjct 9322307 AAGGGAACAAGACTACGCCTTCCTACGTGGCTTTTACAGATACAGAGAGACTCGTTGGTG 9322248 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 ||||||||||| |||||||| || ||||||| ||||| |||| ||||| |||||| Sbjct 9322247 ATGCAGCAAAAGATCAAGCCGCTCGTAATCCGGAGAATACAGTTTTCGATGCAAAACGTC 9322188 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 ||||||||||| | || |||| |||||||| | ||||| || |||||||| ||| Sbjct 9322187 TAATTGGAAGACGATTCGATGAAGAAACTGTTCAATCTGATATTAAACATTGGCCATTC- 9322129 Query 550254 AAATTGTTAATG---TTTCTGGAAAACCTTATATTGAAGCT--ACTCATGAAGGATCTGT 550308 | ||||| | ||||| || | |||| | | | | | ||||| | Sbjct 9322128 --ACAGTTAAAGGAAAACAAGGAAAGCCCGTTGTTGAGGTTGAAGTGA--AAGGA---GA 9322076 Query 550309 TAAAC---AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAAC 550365 |||| |||| | ||| |||| || | ||||| | ||| |||||| |||| Sbjct 9322075 AAAACGAGAATTCAATGCTGAAGAAATATCTGCAATGGTACTTCAGAAGATGAAAGAAAC 9322016 Query 550366 AGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTT 550425 || ||| | |||| || || |||||| || || ||||| || |||||||| Sbjct 9322015 GGCTGAAGCTGTACTTGGGCATTCTGTACGGGATGCTGTCATTACTGTGCCTGCATATTT 9321956 Query 550426 TAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCT 550485 |||||| || | || || || |||||||| | |||||||||||| |||| | Sbjct 9321955 TAATGATAGCCAGAGGCAGGCGACCAAAGATGCAGCTACTATTGCTGGACTCAATGCAAT 9321896 Query 550486 TCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 |||||||||||||||||| || || || || | || |||||||| |||||| Sbjct 9321895 TCGTATTATCAATGAACCAACGGCGGCAGCTTTGGCCTATGGACTCGATAAA 9321844 Score = 93.3 bits (102), Expect = 3e-13 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 434566 GTGTGTATTTCAAAAATTTTAACACGACCAGATTTATTTGGAAGATCAATTTTAATATGA 434625 ||||| |||| || ||||| || || |||| | || ||||| || || || || Sbjct 7768606 GTGTGAATTTTAAGAATTTGAAGTCGTCCAGTCTCATCAGGAAGTGAAACTTCCATTTGG 7768665 Query 434626 ACACCAAATCTCCCCGAACGAATAACTGCAGGATCTAATAAT-TCTAATCTATTGGTTAT 434684 || | ||||| || | ||||| || || ||| ||| || || ||||||||| || Sbjct 7768666 ACTTCCAATCTTCCTGGACGAAGAAGAGCTTCATC-AATCATATCACGTCTATTGGTCAT 7768724 Query 434685 TCCAATGCAAATAAAATTATTAAATTGTTCTAATCCATCCATTTCTGCTAAAAATTGATT 434744 ||| || || || |||||| |||||||||| ||||||||||| || | |||||||| Sbjct 7768725 TCCGATTACAAGAATATTATTCAATTGTTCTACTCCATCCATTTTTGAGAGCAATTGATT 7768784 Query 434745 AACAACAG 434752 ||||||| Sbjct 7768785 CACAACAG 7768792 >seq6 Length=17718942 Score = 111 bits (122), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| | |||||| || |||| |||||||| | | || ||||| | | ||| Sbjct 6091291 AAGCAATTCACCCCAGAAGAAGTTTCCGCTATGGTTCTCGTCAAGATGAAGGAGATCGCC 6091232 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| || |||| | ||||| | | | || || | ||||| ||||| ||||| || Sbjct 6091231 GAGTCCTACC-TTGGAAAGGAAGTCAAGAACGCCGTCGTCACTGTCCCAGCTTATTTCAA 6091173 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| | |||||||||||||| || ||||| ||| || |||||| | || ||| |||| Sbjct 6091172 CGACGCCCAACGTCAAGCTACCAAGGATGCCGGAACCATCGCTGGATTGAACGTTGTTCG 6091113 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| || || || || || || | || || |||||||| || Sbjct 6091112 TATCATCAACGAGCCAACCGCCGCCGCCATCGCCTACGGACTTGACAA 6091065 Score = 105 bits (116), Expect = 5e-17 Identities = 190/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 550312 ACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || |||||||| |||| | || || | ||||||| |||| ||||| | || ||| Sbjct 3293677 ACGATTTTCACTCCAGAGAAGATCTCCGCATTGGTTTTGCTGAAGATGAAGGAGACCGCC 3293736 Query 550370 AGTGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427 || || |||| || | |||| |||||| || | ||||| |||| || | | Sbjct 3293737 GAGGCCTTCCTTGG--AACCACCGTTAAGGATGCCGTTGTCACTGTCTCAGCTTACCTCA 3293794 Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTC 550487 | ||||| || ||| |||| || || ||||| ||| || ||||||||||| ||||||| Sbjct 3293795 ACGACTCCCAGCGTGAAGCAACCAAGGATGCCGGAGCCATCGCTGGACTTAACGTTCTTC 3293854 Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATC 550547 |||| ||||| || || || ||||| ||| | || || || |||| || | | Sbjct 3293855 GTATCATCAACGAGCCAACCGCTGCCGCAATCGCTTACGGGTTTGACAAGGAGGTACACG 3293914 Query 550548 AAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 ||||| ||||| || ||||| ||| |||||| Sbjct 3293915 GAGAACGCAATGTTCTTATCTTCGATCTGGGAGGT 3293949 >seq5 Length=20924180 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || || || || || |||||||||||||| |||||||||| || Sbjct 4826181 ACAGTTCCAGCTTACTTCAACGATTCTCAGCGTCAAGCTACTAAGGATGCTGGACAAATC 4826122 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 |||| ||||| ||||||||| | ||||| || || |||||||| || || || |||||| Sbjct 4826121 TCTGGTCTTAACGTTCTTCGTGTCATCAACGAGCCAACTGCTGCCGCTCTCGCCTATGGA 4826062 Query 550529 CTTGATAA 550536 | ||||| Sbjct 4826061 TTGGATAA 4826054 >seq4 Length=17493829 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 368793 AGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATT 368852 |||||| ||||| |||||||||||||| || ||||| |||| || | ||||||||||| Sbjct 10370363 AGTTTTTGATTGTTGGTTTGAATCAGGATCCATGCCATATGCCCAGAATCATTATCCATT 10370422 Query 368853 TGATAA-CGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAAT 368911 ||| || |||||||| ||| | | || | ||| |||||||| | | ||| Sbjct 10370423 TGAGAACCGCAAAAT-CTTCG---AAGACA---ATTTCCCAGCTGATTTCATCGCTGAAG 10370475 Query 368912 CAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCG 368971 |||||| ||||| ||||| |||||||| || || |||| | || || ||| | ||| Sbjct 10370476 GAATTGACCAAACCCGTGGGTGGTTTTACACACTTCTAGTTCTGTCAACTGCTTTGTTCA 10370535 Query 368972 ATAAACC 368978 | || || Sbjct 10370536 ACAAGCC 10370542 >seq3 Length=13783801 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAG 563311 || |||||||| || | |||||| ||| || ||||| || ||||| || | || | Sbjct 5943186 CTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGG--ATGTTGTAGTCGGAGAGGG 5943129 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | ||||| |||||||||||||| || || ||||| |||||||| || || |||| Sbjct 5943128 TACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 5943069 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 |||| || |||||||| || || || ||| || ||||||| | | | | ||| Sbjct 5943068 CTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAG-GCTTCGACTTCA 5943010 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || || ||||| | || || ||||| || |||||| Sbjct 5943009 AGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCATA 5942965 Score = 91.5 bits (100), Expect = 1e-12 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||||| || | ||| ||||| ||| || |||||||| || | || || Sbjct 5942958 CTGAGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTA 5942899 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| || ||||| |||||||| || || | | ||||||||| || || || ||| Sbjct 5942898 CGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCT 5942839 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||| ||||| || || || || |||||| || |||| | | || ||||| Sbjct 5942838 TCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAG-AAGCTTCCACCTCGAG 5942780 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || |||||||| || ||||| || ||||| Sbjct 5942779 CGTGATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCAT 5942738 Score = 86.0 bits (94), Expect = 5e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| || | |||||| || ||| || || ||||| || | || || | Sbjct 5941712 ACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 5941653 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || || || || |||||||| || ||||||||||||||||| || || ||||||||||| Sbjct 5941652 GTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTT 5941593 Query 563379 ATCTTGAATTTT 563390 ||||||||| || Sbjct 5941592 ATCTTGAATCTT 5941581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295629808430