Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 5e-14 seq4 87.8 2e-12 >seq6 Length=17718942 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 |||||||||| ||| ||| |||||||||| ||||||||||| |||| |||||| |||| Sbjct 1430812 TTTGATATTCGGAAACGCGTTTTTCGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTT 1430753 Query 36946 CCATAAAATCAAATGGATT 36964 ||||||||||||| || || Sbjct 1430752 CCATAAAATCAAACGGGTT 1430734 >seq4 Length=17493829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 |||||||||| ||| ||| ||| |||||| ||||||||||| |||| |||||| |||| Sbjct 6253105 TTTGATATTCGGAAACGCGTTTTTAGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTT 6253046 Query 36946 CCATAAAATCAAA 36958 ||||||||||||| Sbjct 6253045 CCATAAAATCAAA 6253033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316748172280