Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 >seq3 Length=13783801 Score = 134 bits (148), Expect = 3e-26 Identities = 221/319 (69%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || |||||||| || | ||||| || ||| ||||||| Sbjct 4093982 CCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATCGAAGCGAATGATCCACTGAAGAAG 4094041 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || ||||| || |||| || || |||| ||||| |||||||| || Sbjct 4094042 ATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCAGCGAACGAAGCCTTCTTGTCCGAA 4094101 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 |||||| ||| |||||||| ||||||||||||||| | | | || | ||| | Sbjct 4094102 ATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATGAACTCGAACTCATCAACGGCGTTG 4094161 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || || | || | || | || || ||| || | |||||| | ||||||| Sbjct 4094162 AAAAGAGTGTTTCGTTCCGTCTCATCACGAATATAAGTCTCAATCAGCTTCGAGTACATC 4094221 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || || || | ||||| || || |||||||| |||||||| || || || | || Sbjct 4094222 TCTGAATGAATGTTCTCAATGGCAATCTGGAATCCGTAGAAAAACCGTGCTTCTGAGACT 4094281 Query 48491 TGCACTTCTGTGGAGAATC 48509 || ||||| | ||||||| Sbjct 4094282 TGAACTTCGTTCGAGAATC 4094300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532718490880