Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 >seq2 Length=15279421 Score = 138 bits (152), Expect = 1e-27 Identities = 262/386 (68%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| || ||||| |||||||||||||||||||| || Sbjct 6053389 ACTCCAATTGGTCCAACACCTGGACCACCTCCTCCGTGTGGAATACAGAATGTCTTGTGA 6053330 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || | ||| | ||||| || ||||| | ||| | || || || ||| Sbjct 6053329 AGGTTCAAATGCGACACATCACTCCCGTAGTCTCCTGGACGACACAATCCAACTTGAGCA 6053270 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||| ||||| || || ||||||| |||||||| | | ||| | Sbjct 6053269 TTCATATTGGCTCCATCAAGATAAACTTGTCCACCATGCTCATGAACTTTGTCACAAACA 6053210 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | || || |||||||| ||||||||||||||||| || | ||||||| || Sbjct 6053209 TCACGAATCGATGACTCAAATACTCCATGAGTCGATGGATAAGTGACCATAATAGCTGCC 6053150 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATCA 138482 | || | || | | | ||||| | ||||| ||| || ||||| || | | Sbjct 6053149 AATTGATTTGAGTACTTCTCAGCTTTAGCTGCCAGATCCTTGTAGTTGATGTTTCCGTGA 6053090 Query 138483 TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 | ||| | | || | ||||| ||||| ||||| ||| || ||||||||| Sbjct 6053089 TGATCTGAGTCCACGACAACAACCTTCATATTAGCCATTTGAGCAGATGCTGGATTAGTT 6053030 Query 138543 CCATGTGCTGACTCTGGTATCAGACA 138568 |||||||| ||| ||| || ||||| Sbjct 6053029 CCATGTGCAGACGTTGGAATGAGACA 6053004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998349337640