Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4 134 2e-26 >seq4 Length=17493829 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 47970 ACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGA 48029 ||| | ||||||| ||||| || || | ||| ||| | || ||| |||| ||| | Sbjct 8989619 ACCTCTTCTTGGACTCTCATGGTTGAACAAAATTCCATTGCAAGCAAACATATTGTAGGC 8989560 Query 48030 TTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 |||||||||||| || ||||||||||| || | || |||||| |||| ||||| | Sbjct 8989559 TTCACGATAGTTAACAACAATCCAGTACCCGTACATCTTGGCAACAGCATATGGAGATCT 8989500 Query 48090 TGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACT 48149 ||||||||| || || |||| | |||||| ||||||| || || ||||| | ||| Sbjct 8989499 TGGATAGAATGGAGTCTTCTCACTTTGTGGAATCTCTTGAACTTTTCCATACAATTCGGA 8989440 Query 48150 GGTGGATGCTTGATAGATACGAAC 48173 |||||||||||||||| ||||| Sbjct 8989439 TGTGGATGCTTGATAGAATCGAAC 8989416 Score = 113 bits (124), Expect = 6e-20 Identities = 229/329 (70%), Gaps = 22/329 (7%) Strand=Plus/Minus Query 47580 TTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGC 47639 |||||| || | | |||||||| || |||| || ||||| ||||| ||||||| Sbjct 8990080 TTCCCATCCAAGAGTCTTCTTTGCTTTTTCAGCATTTCCCAATAAAGTCTCCACTTCAGT 8990021 Query 47640 AGGACGGAAATA-TTTAGAGTCAATTCTGATAAC-CGTTTTAC--CATCAGAATCAATAC 47695 || | | | || ||| || | | || |||| || | || |||| || | | Sbjct 8990020 TGGTCTGTAGTACTTTGGACTAACTT----TAACTCGAATAACTCCATCTTTATTCTTTC 8989965 Query 47696 CAACTTCATCAAGACCAGAACCTTCCCATCT-AATA-TTC----ATATCAAAATAAGGTG 47749 ||||||| |||| ||| ||||||||| |||| ||| || ||| | | || Sbjct 8989964 CAACTTCCTCAACACCTTCTCCTTCCCATTGCAATACTTCTCCAATTTCAGCAAA---TG 8989908 Query 47750 CA-GATTCCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCA 47808 || |||| | ||| ||||| || |||| || ||||| || ||||| ||||||||| Sbjct 8989907 CAAGATTACAAAACTCTCTGAC--ACTGAAT--TGTTTTCCAGTTGCAATCACAAAATCA 8989852 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 || ||| || |||||||| ||| |||||| || || ||||| |||||||| |||||| Sbjct 8989851 TCTGGTGAGTCGTGTTGAAGAATTCTCCACATTGCTTCAACATACTCTCTGGCGTGTCCC 8989792 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAG 47897 || |||||||| ||| |||||||| || Sbjct 8989791 CAATCACGAAGAGCACTCAGATTTCCGAG 8989763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494341769240