Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 129 7e-25 seq1 86.0 7e-12 >seq3 Length=13783801 Score = 129 bits (142), Expect = 7e-25 Identities = 646/1026 (63%), Gaps = 61/1026 (6%) Strand=Plus/Minus Query 75955 TAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 |||||| | ||| | ||||| |||||| | || || | ||||| ||||| ||||||| Sbjct 9226673 TAACCAGCAAAATCTTGGAACTATCAAGTGTTCCAACTTGTGCACTGAAATCATAGAGTA 9226614 Query 76015 CACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG-TATG 76073 | | | | ||||||| || |||||||| | || || || || || | | | || | Sbjct 9226613 CTCTGCTCCAGATGAGATTGCAGTTTGCAACCTTGCTTCCATTGCTCT-CAATCGCTACG 9226555 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | | |||| | || || | | ||||| ||| | || || || | | Sbjct 9226554 TGACCCCCGAGAAA---AAGTTCGACTTCGTCAAACTGGCTGAGGTGACTAAAGTTATAA 9226498 Query 76134 CCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGT 76193 ||| |||| | || | |||||| || | ||||| || ||| || || || | Sbjct 9226497 CCAGAAATTTGAATAAGATTATTGACGTCAACTACTATCCAGTCGAGGAGGCTCGCAACT 9226438 Query 76194 CTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT 76253 |||||||||| || | || || || | ||||| ||||| ||||| ||| || || | Sbjct 9226437 CTAATATGCGCCATCGCCCAATCGGGCTTGGTGTCCAAGGACTCGCTGATTGCTTCATGT 9226378 Query 76254 TGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAA 76313 || || ||| |||| ||| | ||||||| || | || || ||||| |||| Sbjct 9226377 TGATGCGTTACCCATTCACTTCGGCAGAAGCCAGAGATCTCAACAAACGAATCTTCGAAA 9226318 Query 76314 CCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATG 76373 |||| || |||| | |||| || ||||||||||||||||| | || | || Sbjct 9226317 CCATCTACTACGCTGCATTGGAAGCCAGTTGTGAATTGGCTGAGTTGAATGGACCATACT 9226258 Query 76374 AGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTG 76433 ||||| || || ||||| | || |||| |||||| ||||||||||||| | || Sbjct 9226257 CGACATACGAAGGATCTCCAGTATCGAAAGGACAGCTTCAATTTGATATGTGGGGA-GTC 9226199 Query 76434 AAACCAA--GCTCAACTACGACTGGG---ATGTTCTCAAGGAA----------------- 76471 | |||| | |||| | ||| |||| | ||| |||| || Sbjct 9226198 ACTCCAACCGATCAA-TGCGATTGGGCCACTCTTCGCAAGAAAATTGCAAAGTAAGATTA 9226140 Query 76472 -----------CGCATC------AAGGA-----------GAAGGGTCTTCGTAACAGTCT 76503 || ||| || | | | ||| | || |||||||| Sbjct 9226139 AAATACTCTTTCGAATCTGATTAAACTACTTATTTACAGGCATGGTATCCGCAACAGTCT 9226080 Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 | ||||||| ||||||||||| || ||||| || ||||| | || || ||||||| | | Sbjct 9226079 TCTGATGGCTCCAATGCCAACTGCTTCCACTGCTCAAATTCTCGGAAACAATGAATCCAT 9226020 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 || |||||||| | ||||||||| | | || | || || || ||||| Sbjct 9226019 CGAGCCATACACTTCGAACATCTACTCTCGCCGTGTTCTTTCTGGAGATTTCCAGATTGT 9225960 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA 76683 || ||| | |||| || | | | | || | ||| | | || |||||| | Sbjct 9225959 GAATCCTCACATGCTCAAGGATTTGGTGGAAAGAGGATTGTGGACTGATGAGATGAAGAA 9225900 Query 76684 TC-TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCA 76742 || || || | | ||| ||||||||||| || | || ||| || |||| Sbjct 9225899 TCGTCTGATTGCCAAC-AATGGATCCATTCAAAACATTGATGGAATTCCATCCGACATCA 9225841 Query 76743 AGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAG 76802 || | || || |||||||||||||| ||| ||||| | ||||| ||||| || | Sbjct 9225840 AGGAACTTTATCGCACAGTGTGGGAGATCTCTCAAAAAGACATTATTGAGATGGCTGCTG 9225781 Query 76803 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-AAAGTCCAACG 76861 ||||||| | |||||||||| ||| | | || | ||||| ||| | | | Sbjct 9225780 ATCGTGGAGCATACATTGATCAATCCCAATCTCTTAACATTCACATGGCCAAGCCAAGCT 9225721 Query 76862 ATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921 | | || || | || |||||| | |||| ||||| |||| ||||| || |||||| Sbjct 9225720 ACG-CCGGTATCACATCAATGCATTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATG 9225662 Query 76922 TACTAT 76927 |||||| Sbjct 9225661 TACTAT 9225656 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/278 (69%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 14362 GGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATA-AGAATCTCA 14420 ||||||| ||| ||| |||| |||| || | | ||| |||||| | | || | || Sbjct 10144209 GGATGGTTTCAGGCCAGGACAGCGGAAGGTTCTCTTTGCGTGCTTCAAAAGAGCAGA-CA 10144151 Query 14421 AGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACC 14480 || |||| | || || || ||| |||| | | |||||| || | ||||||||||| | Sbjct 10144150 AGCATGAGGTCAACGTAGCTCAATTGGCTGGAGCTGTCGCTGATATTTCTGCGTACCATC 10144091 Query 14481 ATGGTGAAGTATC-CTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCA 14539 | || ||| || |||| ||| || ||||| || | || | || ||| || || Sbjct 10144090 ACGGAGAACAGTCGCTTATGGGA-ACAATTGTGAATCTCGCTCAAGATTACGTTGGATCC 10144032 Query 14540 AACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 |||||||| ||||| ||| || || ||||| ||||| |||||| |||||| ||| Sbjct 10144031 AACAACATCAACCTGCTTCTTCCAATCGGACAATTCGGTACTCGTCTCCAGGGTGGAAAG 10143972 Query 14600 GA---TGCTTCTCAGACGAGGTACATTTTCACAAAACT 14634 || |||| |||| | | ||||| ||||| |||| Sbjct 10143971 GACAGTGCT--TCAG-CTCGTTACATCTTCACTCAACT 10143937 >seq1 Length=15072434 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27897 TACCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTC 27956 |||||||||||| || || ||| |||||| |||| |||||||| || || |||||| Sbjct 9586948 TACCTCAAAGTCATTTTCGCCGAAATTGAAAAGAAGAACTTTGACCTCTCCACGATAGTC 9586889 Query 27957 GGGATCAATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGG 28016 | ||| || ||||| || ||||| | || |||||| |||| || || ||||| || Sbjct 9586888 GCTATCGATGACACCTGCTCCAACATCGATGAAATGCTTGGCAGCCAGTCCAGATCGAGG 9586829 Query 28017 TGCAACACGACCATA 28031 ||||| | ||||| Sbjct 9586828 AGCAACTCTTCCATA 9586814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569547800160