Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 104 4e-17 >seq3 Length=13783801 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||| || || |||| ||| | |||| ||| || || || |||||| Sbjct 5943195 ATACCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCG 5943136 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || | |||||||||||| || || | |||||| ||||| || Sbjct 5943135 GAGAGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGT 5943076 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| || | ||| || ||||| || | || Sbjct 5943075 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCG 5943016 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || | || || || || || ||||| Sbjct 5943015 ACTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5942966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || |||| ||| | |||| ||| || || || Sbjct 5942241 ATTTGCATTCCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTG 5942182 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | || | ||| || | ||| ||||||||||| || || | ||||||| Sbjct 5942181 TAATCGGAGAGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGA 5942122 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || |||| || | || |||||| || ||| Sbjct 5942121 TCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAA 5942062 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||| || ||||| ||||| || || || | || || || || || |||||| Sbjct 5942061 GCTTCAACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||||||| || || |||| ||| | || | || || || || ||||| Sbjct 5941726 ATACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCC 5941667 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || | || |||||||| || || | ||| || ||||| || Sbjct 5941666 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGT 5941607 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | || | |||| || || ||||||| || Sbjct 5941606 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCG 5941547 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || | || || || || || ||||| Sbjct 5941546 ACTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654321280240