Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 2e-14 seq6 84.2 4e-11 >seq3 Length=13783801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || | || ||||| | ||| | || || || || || || Sbjct 5941726 ATACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCC 5941667 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || || || || || || | ||| || || || ||| Sbjct 5941666 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGT 5941607 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || ||| || ||||| || || || || | ||| Sbjct 5941606 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCG 5941547 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || ||||| ||||| || | ||| |||||||| Sbjct 5941546 ACTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | |||||| || || ||||| |||||||| || ||||| || || Sbjct 5941866 TACCAGCAAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGG 5941807 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| || || || || | ||| ||||| || || ||||| || || || | Sbjct 5941806 CCTTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCA 5941747 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 |||| || | ||| |||||||| Sbjct 5941746 ATGTCTTGACGAAGATCTGCAT 5941725 >seq6 Length=17718942 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| ||||| ||||| |||||||||||||||||| ||||| |||| |||||| | Sbjct 1430812 TTTGATATTCGGAAACGCGTTTTTCGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTT 1430753 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATA 38923 |||||||||||| || ||||| || || || Sbjct 1430752 CCATAAAATCAAACGGGTTTTTTGTGTTGTA 1430722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135920800600