Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 136 1e-26 seq4 116 1e-20 >seq1 Length=15072434 Score = 136 bits (150), Expect = 1e-26 Identities = 250/361 (69%), Gaps = 9/361 (2%) Strand=Plus/Minus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| | ||||| || |||||||| ||||| || | | |||||||| || | ||| || Sbjct 3471101 TTTTCTTCCAACTGCGTCAATTTCATCAATAAATAGAATGCACGGAGAGTTCTTTCTAGC 3471042 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 |||| || | || | || | | | ||| | || || ||||||| | ||||| Sbjct 3471041 CATTGAGAACATGTCACGGACTCTTGCAGGTCCTACTCCGACGAACATTTCCAGGAATTC 3470982 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | ||||| ||||||| |||||||| ||||| || |||| |||| ||||| Sbjct 3470981 GGATCCCGATACAGTGATGAATGGAACATTTGCCTCGCCGGCGGTTGCCTTCGCGAGAAG 3470922 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCC 289259 |||||| || |||||||| |||| || ||||| |||| || || | ||| || || Sbjct 3470921 TGTCTTTCCGGTTCCAGGAGGTC---CTGTTAGAATGGCTCCTTTCGGAATTTTCGCGCC 3470865 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTTA-AAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | ||| || | || ||| |||| | |||||| |||| ||| || ||| || Sbjct 3470864 AAGATCCTTGTACTGCTGGGGGTTCTTCAGGAAATTC-ACAAACTCCATAATTTCGATTT 3470806 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCTTGCGTAATG 289378 ||||||| ||||| || || ||||| || || | | || ||||| |||| | ||||| Sbjct 3470805 TTGCCTCTTCACAACCGGCAACATCGGCGAACTTCACCTTGATATC-TTCTCGATTAATG 3470747 Query 289379 A 289379 | Sbjct 3470746 A 3470746 >seq4 Length=17493829 Score = 116 bits (128), Expect = 1e-20 Identities = 201/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| | ||||||| |||||||| |||||| |||||||| ||||| Sbjct 4252348 ATCATAATTAACCATTACACTTTCCATAGCCTTGATTAGACGACGTTGAATATATCCAGT 4252289 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||||||||||||||| ||||| |||| || ||||| || |||||||| Sbjct 4252288 CTCGGCAGTCTTTACAGCTGTATCAATCAGACCTTCACGTCCTCCCATTGCGTGGAAGAA 4252229 Query 302673 TAGCTCTTCCGGTCG---TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC 302729 | ||||| | | ||| || | | | |||| | || || ||||| | || Sbjct 4252228 GA---ATTCCGATGGAGTTAGGCCGGCCAGATAGGAATTTTCGACAAAACCTTTGGATTC 4252172 Query 302730 GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGAT 302789 || || |||| |||| | ||||| || || || | | | ||| |||| || Sbjct 4252171 CGGTCCATAGTCGTCCTTGATGAAGTGAGGAAGTGTACGATGACGGAAACCGAATGGAAT 4252112 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAAT 302840 ||||||||| || ||||| || ||||| | |||| || | |||| |||| Sbjct 4252111 ACGCTTTCCTTCGACGTTTTGTTGTCCGACACACGCGATAACCTGCAAAAT 4252061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817467996359