Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-15 seq5 95.1 1e-13 seq2 89.7 6e-12 >seq3 Length=13783801 Score = 100 bits (110), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||| || ||| |||||| ||||| ||||| || |||| |||||| |||||| Sbjct 4093579 TACTCGGAAACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTCCATG 4093638 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| || || || |||||| |||| || || |||||| |||||| | Sbjct 4093639 AAGTCGAATGGATTCTTCGACTTGTAAAGCTTGTCACAACCGAGCTCGACGAGCAAATGA 4093698 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||||||||||||||||||||| |||| || | ||||||||| || | | || Sbjct 4093699 TCGGCGACAAACTCGATGTACTGTGACATAAGACGACAGTTCATGCCAATCATGTCAACT 4093758 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || || | ||| ||| || |||| ||||| | || || || |||||| Sbjct 4093759 GGAAGTGCCTCAGTCAGGAATTCTTGTTCGATGGCCACAGCGTCCTTGATGAT 4093811 >seq5 Length=20924180 Score = 95.1 bits (104), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 |||| || ||||| || || || ||||| | ||| ||| | |||||| |||| Sbjct 8536640 ATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGATGGTGGATCTCTTGTTGTAGTGA 8536581 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || ||||| ||||| | |||| || |||| | ||||||||| |||||||||||| Sbjct 8536580 GCAAGACGAGATGCCTCAGCAGCGATACGCTCGAAGACGTCGTTGACGAACGAGTTCATG 8536521 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | ||||| | |||| |||| || ||| || || |||||||||||||| | || Sbjct 8536520 ATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGATGAACCTGCTTGAGCACACGGAAG 8536461 Query 1254546 ATGAACGACGAGTACGA 1254562 ||| || | ||||| || Sbjct 8536460 ATGTACAAGGAGTAGGA 8536444 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 8850782 GCTTGGCAAGCTCTCCTGGAAGAATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGA 8850723 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||| ||||| | |||| || |||| | Sbjct 8850722 TGGTGGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCAGCAGCGATACGCTCGAAGA 8850663 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8850662 CGTCGTTGACGAAAGAGTTCATGATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 8850603 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8850602 GAACCTGCTTGAGCACACGGTAGATGTACACGGAGTAGGA 8850563 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 8853059 GCTTGGCAAGCTCTCCTGGAAGAATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGA 8853118 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||| ||||| | |||| || |||| | Sbjct 8853119 TGGTGGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCAGCAGCGATACGCTCGAAGA 8853178 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8853179 CGTCGTTGACGAAAGAGTTCATGATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 8853238 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8853239 GAACCTGCTTGAGCACACGGTAGATGTACACGGAGTAGGA 8853278 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 8892877 GCTTGGCAAGCTCTCCTGGAAGAATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGA 8892818 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||| ||||| | |||| || |||| | Sbjct 8892817 TGGTGGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCAGCAGCGATACGCTCGAAGA 8892758 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8892757 CGTCGTTGACGAAAGAGTTCATGATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 8892698 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8892697 GAACCTGCTTGAGCACACGGTAGATGTACACGGAGTAGGA 8892658 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 8895154 GCTTGGCAAGCTCTCCTGGAAGAATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGA 8895213 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||| ||||| | |||| || |||| | Sbjct 8895214 TGGTGGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCAGCAGCGATACGCTCGAAGA 8895273 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8895274 CGTCGTTGACGAAAGAGTTCATGATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 8895333 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8895334 GAACCTGCTTGAGCACACGGTAGATGTACACGGAGTAGGA 8895373 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| |||| || ||||| || || || ||||| | || Sbjct 16040197 GCTTGGCAAGCTCTCCTGGCAGAATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGA 16040256 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||| ||||| | |||| || |||| | Sbjct 16040257 TGGTGGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCAGCAGCGATACGCTCGAAGA 16040316 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 16040317 CGTCGTTGACGAAAGAGTTCATGATAGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 16040376 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 16040377 GAACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 16040416 Score = 86.0 bits (94), Expect = 8e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 8532768 GCTTGGCAAGCTCTCCTGGAAGAATCAAACGGACGGCAGTTTGAATTTCGCGAGAAGAGA 8532827 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||| || || | |||| || |||| | Sbjct 8532828 TGGTGGATCTCTTGTTGTAGTGAGCAAGACGAGATGCTTCAGCAGCGATACGCTCGAAGA 8532887 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| || | Sbjct 8532888 CGTCGTTGACGAAAGAGTTCATGATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 8532947 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||||| || Sbjct 8532948 GAACCTGCTTGAGCACACGGTAGATGTACACGGAGTAGGA 8532987 >seq2 Length=15279421 Score = 89.7 bits (98), Expect = 6e-12 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| || || |||||||| || ||||| | || Sbjct 13818686 GCTTGGCAAGCTCTCCTGGAAGGATCAGACGGACAGCGGTCTGAATTTCGCGGGATGAGA 13818627 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || |||||| || || | | || || |||| | Sbjct 13818626 TTGTGGAACGCTTGTTGTAGTGAGCAAGACGGGATGCTTCAGCAGCAATACGCTCGAAGA 13818567 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||| |||||||||| ||||| | ||| ||| | || ||| || | Sbjct 13818566 CATCGTTGACAAAAGAGTTCATGATAGACATGGCTTTGGAGGAAACTCCAGTGTCTGGAT 13818507 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | || |||||||| || ||||||| | ||| ||||| || Sbjct 13818506 GAACTTGCTTGAGGACACGGTAGATGTA-GACGGAGTATGA 13818467 Score = 89.7 bits (98), Expect = 6e-12 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| || || |||||||| || ||||| | || Sbjct 13822124 GCTTGGCAAGCTCTCCTGGAAGGATCAGACGGACAGCGGTCTGAATTTCGCGGGATGAGA 13822065 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || |||||| || || | | || || |||| | Sbjct 13822064 TTGTGGAACGCTTGTTGTAGTGAGCAAGACGGGATGCTTCAGCAGCAATACGCTCGAAGA 13822005 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||| |||||||||| ||||| | ||| ||| | || ||| || | Sbjct 13822004 CATCGTTGACAAAAGAGTTCATGATAGACATGGCTTTGGAGGAAACTCCAGTGTCTGGAT 13821945 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | || |||||||| || ||||||| | ||| ||||| || Sbjct 13821944 GAACTTGCTTGAGGACACGGTAGATGTA-GACGGAGTATGA 13821905 Score = 89.7 bits (98), Expect = 6e-12 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| || || |||||||| || ||||| | || Sbjct 13826783 GCTTGGCAAGCTCTCCTGGAAGGATCAGACGGACAGCGGTCTGAATTTCGCGGGATGAGA 13826842 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || |||||| || || | | || || |||| | Sbjct 13826843 TTGTGGAACGCTTGTTGTAGTGAGCAAGACGGGATGCTTCAGCAGCAATACGCTCGAAGA 13826902 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||| |||||||||| ||||| | ||| ||| | || ||| || | Sbjct 13826903 CATCGTTGACAAAAGAGTTCATGATAGACATGGCTTTGGAGGAAACTCCAGTGTCTGGAT 13826962 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | || |||||||| || ||||||| | ||| ||||| || Sbjct 13826963 GAACTTGCTTGAGGACACGGTAGATGTA-GACGGAGTATGA 13827002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138625547219