Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 >seq3 Length=13783801 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || |||||||| || || || || || || || Sbjct 5940991 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 5941050 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||||||||||| |||||||| || || ||||| Sbjct 5941051 GATACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941110 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| ||||| | | | |||| || || ||| Sbjct 5941111 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 5941170 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || |||||||| Sbjct 5941171 ATCCAGAAGGAATCTACTCTTCACTTGGT 5941199 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || |||||||| || || || ||||| | Sbjct 5942006 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTCT 5942065 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || |||||| Sbjct 5942066 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAA 5942125 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| || || || |||||| | | | || ||||| ||| Sbjct 5942126 CAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAAC 5942185 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || || ||||| | || | || ||||| Sbjct 5942186 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGAGGAGG 5942232 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || ||||| | Sbjct 5942738 ATGCAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTCT 5942797 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||||||||| || || || ||||| Sbjct 5942798 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAG 5942857 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| ||||| || || || |||||| | | | | || || || || Sbjct 5942858 CAACGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 5942917 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || |||||||| || || || |||||| Sbjct 5942918 ATCCAGAAGGAATCAACCCTCCATTTGGTG 5942947 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || || ||||| || ||||| | Sbjct 5943472 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCG 5943531 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| || || || ||||| || || ||||| Sbjct 5943532 GACACCATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAGGGAATCCCACCAGATCAG 5943591 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || || ||||| |||||| | | | || ||||| ||| Sbjct 5943592 CAACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTACAAC 5943651 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| |||||||| || | || | || | |||||||| Sbjct 5943652 ATCCAAAAGGAGTCGACACTTCATCTCGTTCTTCGTCTTCGCGGAGG 5943698 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || ||||| ||||| || Sbjct 5941497 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCTTCC 5941556 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| ||||| ||||||||||| || || ||||| Sbjct 5941557 GACACGATCGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5941616 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 5941617 CAAAGACTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 5941676 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || ||||| | || ||| | ||||| Sbjct 5941677 ATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5941723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || ||||| || |||||||| |||||| | Sbjct 5942462 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCCTCGAAGTCGAAGCCTCT 5942521 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||| |||||||| || || ||||| Sbjct 5942522 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 5942581 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | ||||||||||| Sbjct 5942582 CAGCGTCTTATCTTTGCCGG 5942601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || ||||| |||||| | Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| |||||||| || || ||||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||||| || || || | | | | || || || ||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || || ||||| | || || | ||||| Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGG 5943192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| |||||||| |||||||| || || || Sbjct 12978521 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCTTCC 12978462 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || ||||| || || ||||| Sbjct 12978461 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 12978402 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | |||||||| ||||| Sbjct 12978401 CAAAGATTGATCTTCGCCGG 12978382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || |||||||| |||||| || Sbjct 5941725 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5941784 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| |||||||| || || ||||| Sbjct 5941785 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941844 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || | | || ||||| || Sbjct 5941845 CAGAGACTTATTTTTGCTGG 5941864 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || |||||||| |||||| || Sbjct 5943194 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5943253 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| |||||||| || || ||||| Sbjct 5943254 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5943313 Query 24824 CA 24825 || Sbjct 5943314 CA 5943315 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || ||||| ||||| || Sbjct 5941219 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTTGAAGTTGAAGCTTCC 5941278 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || ||||| || || ||||| Sbjct 5941279 GACACGATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 5941338 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | |||||||| || Sbjct 5941339 CAGCGTCTTATCTTTGCTGG 5941358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897560633960