Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 5e-12 >seq5 Length=20924180 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34317 CTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAG 34376 || ||| |||||||| |||||| || | ||||||||| ||||||||||| | Sbjct 7856361 CTGAGTTTCCGGGTTTTCACATGATTTGCAAAGCACAAACTTTTTAATGAAACCATCTAA 7856302 Query 34377 CAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTA 34436 | ||||| | ||| || || || ||||||||| ||| | || ||||| ||| Sbjct 7856301 AATATCCTGGAGCTTGTTGGCATCATGCTCGCCGTTGACAATGTAACGCTCGTTCTTGGC 7856242 Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 ||||| | |||||| || || ||||| || || |||||||| || |||| Sbjct 7856241 ATCGAAGTTCGTTTGAGCCCCGAGCTCACAGCCAAAGTACTTCGTGGGGT 7856192 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 |||||| | || || || ||||| || | ||||||| ||||| || ||||| ||||| Sbjct 7856127 CGGACGCTCGAGAGCTTTCGCGATCTCAGACATGTTGGAAATGACCGTTTTGATTCCGTT 7856068 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 || || |||||||| || || | | ||||| |||||||||||||| | || || Sbjct 7856067 TCCTTTGCCTTCGACTTTTGCTGACAGCTTGGGCATCTTGTAGCGGTAGAATGGATCAGC 7856008 Query 34614 CACATTGCGGTTAACGTT 34631 ||| |||||| ||||| Sbjct 7856007 GACAGCGCGGTTCACGTT 7855990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841564779451