Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 4e-14 >seq1 Length=15072434 Score = 95.1 bits (104), Expect = 4e-14 Identities = 218/327 (67%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 188758 AAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACA 188817 ||||| || |||||| | ||||| || |||| || || ||||| || | || ||| Sbjct 7577191 AAATCAAACGTTCTTCTTGTTGGACCATCTGGAGTTGGAAAGACATTCCTTACGCAGACA 7577250 Query 188818 TTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCT 188877 || ||| | | | |||| || | || ||| |||| || || | ||| ||||| Sbjct 7577251 TTAGCTCGTGTACTGGATGTTCCAATTGCACTCTGTGATTGTACATCAATGACACAAGCT 7577310 Query 188878 GGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTAC 188937 || ||||| ||||||||||| |||| ||| | | ||| ||||||| || | Sbjct 7577311 GGATATGTTGGTGAAGATGTTGAAAGTGTAATTCAGAAATTAGTCCAAGCTGCCGGAGGA 7577370 Query 188938 GATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGA 188997 || ||||| ||| ||| ||||| || | | | |||||||| || |||||||| | Sbjct 7577371 AATGTCGAAAAAGCTCAACAGGGAATCGTTTTTCTAGATGAAGTCGACAAAATTGC-GGC 7577429 Query 188998 AAATCAGAAAGCACATCCATTACC----CGAGATGTATCTGGCGAAGGAGTACAGCAAGC 189053 || ||| |||| | | | |||||||||||||| ||||| || || || || Sbjct 7577430 TGCACACGAAGGACATTCGGCAGCATATCGAGATGTATCTGGAGAAGGTGTCCAACACGC 7577489 Query 189054 TTTATTAAAAATCATTGAAGGTACAGT 189080 | || | ||| | | || ||||| || Sbjct 7577490 TCTACTGAAACTTGTCGAGGGTACTGT 7577516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591910257225536