Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 192 1e-43 >seq3 Length=13783801 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||||||| ||||| || || ||||| ||||| ||||| || || || || | Sbjct 5941725 TACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCG 5941666 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || ||||| || ||||| |||||||| |||||||| | Sbjct 5941665 AAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTG 5941606 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| |||||||||||||| || || |||||||| ||||| || || ||| | Sbjct 5941605 GGATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGA 5941546 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || ||||| ||||| || || |||||||| Sbjct 5941545 CTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||| ||| ||||| || || |||||||| || || || || || || || | Sbjct 5943194 TACCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGG 5943135 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||||||| ||||||||||| || ||||| ||||| || |||||||| | Sbjct 5943134 AGAGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 5943075 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||||||| || || ||||| || || |||||| | ||| | Sbjct 5943074 GGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGA 5943015 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || ||||| ||||| || || |||||||| Sbjct 5943014 CTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5942966 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| ||||||||||| ||||| || || || ||||| Sbjct 5941217 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5941158 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || ||||| || ||||| || | || |||||||| || Sbjct 5941157 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGA 5941098 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| ||||| |||||||| || ||||| || || || Sbjct 5941097 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACC 5941038 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| || || || || || |||||||| || || || || ||||| ||| Sbjct 5941037 TCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGATT 5940987 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||||||| ||||| || || ||||| ||||| ||||| || || || || | Sbjct 5942462 TACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCG 5942403 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| || || |||||||| ||||| || | ||| |||||||||| Sbjct 5942402 AAAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAG 5942343 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || |||||||| || || || || || || ||||| | ||| | Sbjct 5942342 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGA 5942283 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | || || ||||| || | | ||||| || || || |||||| Sbjct 5942282 CTTCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCATT 5942233 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| ||||| || || |||||||| || || || || || ||||| || Sbjct 5942232 CCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAG 5942173 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || ||||| ||||| |||||||| | | ||||||||||| || Sbjct 5942172 AGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 5942113 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || || ||||| || ||| || ||| || Sbjct 5942112 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACC 5942053 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| || ||||| ||||| || || ||||||||| Sbjct 5942052 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || || || || || || || || || ||||| ||| Sbjct 5943698 CCTCCGCGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGAT 5943639 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || |||||||||||||| | | ||| |||||||| || Sbjct 5943638 AGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGG 5943579 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||| || || || ||||| ||||| ||||| || || || ||| || Sbjct 5943578 ATTCCCTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACC 5943519 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || ||||| ||||| || || |||||||| Sbjct 5943518 TCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || | || |||||||| || ||||| ||||| ||||||||||| || Sbjct 5941358 CCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCC 5941299 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| || || ||| ||||| | || || ||||| || ||||| Sbjct 5941298 TTGACGTTCTCGATCGTGTCGGAAGCTTCAACTTCAAGTGTGATGGTCTTTCCAGTCAAA 5941239 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 5941238 GTCTTGACAAAGATCTGCATT 5941218 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || ||||| || |||||||| || ||||||||||| ||||| ||||| || Sbjct 5941864 CCAGCAAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5941805 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || | ||| ||||| | || || ||||| || ||||| Sbjct 5941804 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5941745 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 5941744 GTCTTGACGAAGATCTGCAT 5941725 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | || |||||||| || ||||||||||| ||||| ||||| || Sbjct 5942601 CCGGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCC 5942542 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || |||||| | ||| ||||| | || || ||||| || ||||| Sbjct 5942541 TTCACATTTTCGATGGTATCAGAGGCTTCGACTTCGAGGGTGATAGTCTTTCCAGTCAAA 5942482 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 5942481 GTCTTCACGAAGATTTGCAT 5942462 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| || || ||||| || |||||||| || ||||||||||| ||||| ||||| || Sbjct 5943333 CCAGCGAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5943274 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || | ||| ||||| | || || ||||| || ||||| Sbjct 5943273 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5943214 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 5943213 GTCTTGACGAAGATCTGCAT 5943194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827111942373