Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq6 82.4 7e-11 >seq3 Length=13783801 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || || ||| ||||||||||||||| || Sbjct 5941187 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 5941128 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| |||||||| || || || || ||||||||||| |||||| ||| Sbjct 5941127 GCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTG 5941068 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || |||| | |||||| || | ||||| ||||| || |||| ||| Sbjct 5941067 ACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCAGTCAACGTT 5941008 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 5941007 TTGACGAAGATTTGCATG 5940990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || ||| | ||||| || ||||| || ||||| || |||||||| Sbjct 5942389 GTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTT 5942330 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||| | | ||| | || |||| || || || |||| ||||| Sbjct 5942329 GTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGAT 5942270 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||| | ||||| || ||||| || ||||| Sbjct 5942269 GGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCAT 5942234 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||||||| | ||| | | | |||||||||||||| || Sbjct 5943668 GTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCA-TCCTCGAGCTGCTTTCC 5943610 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || | || ||||| || || ||||| || ||||| || ||| ||| || | Sbjct 5943609 AGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGAT-TTTGGCTT 5943551 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | | || || |||| |||| |||||| || |||| || Sbjct 5943550 TGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTTTCCAGTCAAAG 5943491 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 5943490 TCTTGACGAAGATCTGCAT 5943472 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| || | |||||| || || || || ||||||||||| |||||| | Sbjct 5943333 CCAGCGAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5943274 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||||| || || || |||| ||||| ||| || ||||||| Sbjct 5943273 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5943214 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 5943213 GTCTTGACGAAGATCTGCAT 5943194 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 |||| || | |||||| || || || || ||||||||||| |||||| ||||| | Sbjct 5941857 AAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACAT 5941798 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| || || || |||| ||||| ||| || ||||||| || || | Sbjct 5941797 TTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAATGTCTTGA 5941738 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 5941737 CGAAGATCTGCAT 5941725 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| || || || ||||||||| | || | | | |||||||| Sbjct 5942211 AAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCA-TCCTCGAG 5942153 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || | ||||| || || || ||||| ||||||||||| ||| Sbjct 5942152 TTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGAT 5942093 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | | || || || | || | || || || Sbjct 5942092 CTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTTTCC 5942033 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||| || ||||| |||||||| Sbjct 5942032 GGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || ||||| || || || ||||| ||| | || |||| ||| |||| Sbjct 5943171 AAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGT--ACGACCGTCTTCGA 5943114 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| | ||||| | |||||| || || ||||| ||||||||||| | Sbjct 5943113 GTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAA 5943054 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||| | || || | || || || || | |||| ||| || | Sbjct 5943053 TCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTTTC 5942994 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || ||||| |||||||| Sbjct 5942993 CAGTCAATGTCTTGACGAAGATCTGCAT 5942966 >seq6 Length=17718942 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 |||||||| || ||||||||||| || ||||| || || ||||| | |||||| || ||| Sbjct 1430798 ACGCGTTTTTCGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTTCCATAAAATCAAAC 1430739 Query 120424 GGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACA 120483 ||||| | | ||| || ||| | | ||||||| | | ||||| | || || ||| Sbjct 1430738 GGGTTTTTTGTGTTGTAGCGTTTGGAGTAACCCAACTCTTCAAGCAGAAGATCAGCGACA 1430679 Query 120484 AACTCAATGTACTCGCACAT 120503 || |||| || | ||||| Sbjct 1430678 AATTCAACATATTTACACAT 1430659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420757700680