Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 120 7e-22 seq5 91.5 3e-13 >seq4 Length=17493829 Score = 120 bits (132), Expect = 7e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 305316 ATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGG 305375 |||| || ||| ||| |||||||| | |||||||| || || || || ||||| ||| Sbjct 7163839 ATGATAACGATGTGGTCTTGTTCAATCGTCAACCATCTCTTCACAAGATCTCTATTATGA 7163780 Query 305376 CTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGC 305435 |||| || |||||| | | ||| || || |||| |||| | |||||||||| | Sbjct 7163779 GCCATAGAGCAAAAGTAATGCCGGGAAGAACGTTCAGATTCAATGAATGTGCTTGTACTC 7163720 Query 305436 CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | ||||| || |||||||| ||||||||||||||| ||||| |||| || Sbjct 7163719 CCTATAACGCCGATTTTGACGGAGATGAAATGAATTTGCATTTACCACA 7163671 >seq5 Length=20924180 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||||||| | ||||||||||| ||||| | | || || || ||||| || ||||| ||| Sbjct 10704251 TCATTACAGCTCCAGCATTATCAAATTC-TCCACAGTAGTTGGGTGCAGAGAATACCGTA 10704193 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATT 167357 || ||| ||| | || ||||| || |||||||| || |||| ||| |||| | Sbjct 10704192 ACCAATCCACGTCGGCCGAAAAATTCGTACCCATCTTCGACTACTTGATGACCACGAACA 10704133 Query 167358 ACAA-GTTCAACTCCTAtttttttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTATA 167416 |||| | ||| ||| ||||||| ||| || | || | || || || ||| ||| Sbjct 10704132 ACAATATCCAAATCC-ATTTTTTGAAGGAATTGAGCAAGGACATCTACACCGAATACATA 10704074 Query 167417 ACTACAACCTCTTTCA 167432 |||| |||||||||| Sbjct 10704073 ACTAACACCTCTTTCA 10704058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812693557727