Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 >seq3 Length=13783801 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | |||||||| ||||| ||| ||||| |||||||| ||||| Sbjct 5943193 ACCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 5943134 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | |||||||||||| || || | | |||||||||| | || Sbjct 5943133 GAGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGG 5943074 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||| |||| || | ||| || | ||| | Sbjct 5943073 GATTCCTTCCTTGTCTTGAATCTTGGCCTTC-ACATTCTCGATGGTATCAGAGGCTTCGA 5943015 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || || |||||||||||| Sbjct 5943014 CTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCATA 5942965 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||||||| ||||| ||| ||||| ||||||||||||||| Sbjct 5942232 CCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAG 5942173 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| ||||||||||| ||||||||||| |||||| | || Sbjct 5942172 AGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 5942113 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || ||| || | || | ||||| | ||| || Sbjct 5942112 ATACCTTCCTTGTCTTGGATCTTGGCCTTC-ACGTTCTCAATAGTGTCAGAAGCTTCAAC 5942054 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || || || || || ||||||||||| Sbjct 5942053 CTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||| || ||||| || || || |||||||| || || Sbjct 5941217 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5941158 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || |||||||| || || | ||||||||||||| | || Sbjct 5941157 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGA 5941098 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || |||| || | ||| ||| | ||||| Sbjct 5941097 ATTCCTTCCTTGTCTTGGATCTT-GGCTTTGACATTTTCGATGGTATCGGAAGCCTCCAC 5941039 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || | ||||| ||||| || || |||||||| || ||||| ||||| ||| || Sbjct 5941038 CTCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGATTGCTG 5940983 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||||||||| || |||||| | || || | || ||||| ||||| Sbjct 5943663 CTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAA 5943604 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||| ||||||||| | || | || || || || ||||| | || |||| Sbjct 5943603 GATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGATTTT-GGCTTTGACAT 5943545 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| | ||| || || | ||||| ||||| || || || || || | Sbjct 5943544 TCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGA 5943485 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 5943484 CGAAGATCTGCATA 5943471 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||||||| | |||||||| ||||| || || || |||||||| || || Sbjct 5941724 ACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGA 5941665 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || |||||||| || || | | ||||||||| | || Sbjct 5941664 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGG 5941605 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || ||| || | | |||| || | |||||| | ||| | Sbjct 5941604 GATTCCTTCTTTATCTTGAATCTT-AGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGA 5941546 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || || |||||||||||| Sbjct 5941545 CTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCATA 5941496 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | ||||||||| || || || || || || ||||| || || Sbjct 5942965 ACCTCCTCTGAGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGA 5942906 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||| |||||||| || ||||| || ||||||||| | || Sbjct 5942905 AAGGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGG 5942846 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || ||| || | || | ||||| | ||||| Sbjct 5942845 GATACCTTCTTTGTCTTGGATCTTGGCCTTC-ACGTTCTCAATAGTGTCAGAAGCTTCCA 5942787 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| || || ||||| | || || || ||||||||||| Sbjct 5942786 CCTCGAGCGTGATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCAT 5942738 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||||||| | |||||||| ||||| || || || |||||||| || || Sbjct 5942461 ACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGA 5942402 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || ||||| || || || | ||| ||||||||| | || Sbjct 5942401 AAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGG 5942342 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 5942341 AATTCCTTCCTTGTC 5942327 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | || | |||||| || ||||| |||||| || || |||||||| || Sbjct 5941496 ACCTCCTCTGAGGCGGAGCACCAAGTGGAGAGTAGACTCTTTCTGAATATTGTAATCAGA 5941437 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||||||||| | || |||||||| ||||| | ||||| Sbjct 5941436 GAGTGTGCGTCCATCTTCCAATTGCTTTCCTGGAAAAA 5941399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703971957440