Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 118 3e-21 >seq3 Length=13783801 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| | ||||| ||| ||| ||| Sbjct 5941500 CAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCTTCCGAC 5941559 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| ||||||||||| || || ||| Sbjct 5941560 ACGATCGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAA 5941619 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||||||||||| | || || || | || | | || |||||| || Sbjct 5941620 AGACTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATC 5941679 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || |||||||| Sbjct 5941680 CAGAAGGAATCAACTCTTCA 5941699 Score = 114 bits (126), Expect = 3e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||||| | || |||||||| ||||| |||| ||||| ||| || || ||||| Sbjct 5941005 CAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCTTCCGATACCATCGAAAA 5941064 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| || ||||||||| || || || | || |||| Sbjct 5941065 TGTCAAAGCCAA-GATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAGCGTCTCATCT 5941123 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||||||| | || || || | || || | || |||||| ||||||| || | Sbjct 5941124 TCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAACATCCAGAAGGAAT 5941183 Query 206363 CTACTCTTCACCTTGTT 206379 ||||||||||| | ||| Sbjct 5941184 CTACTCTTCACTTGGTT 5941200 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| | ||||| ||| ||||| Sbjct 5942969 CAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCTGAT 5943028 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || |||||||| || || || Sbjct 5943029 ACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAG 5943088 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| |||||||||||||| || | ||||| || | || | |||| |||||| || Sbjct 5943089 AGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAACATC 5943148 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || |||||||||||||| Sbjct 5943149 CAAAAGGAGTCTACTCTTCA 5943168 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || |||||||| |||||| | || || ||| ||| ||| Sbjct 5943475 CAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCGGAC 5943534 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || || || || || ||||| || || || Sbjct 5943535 ACCATTGAGAATGTCAAAGCCAAA-ATCCAGGATAAGGAGGGAATCCCACCAGATCAGCA 5943593 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || ||||||||| | || |||||| | ||| | ||||||||||| | Sbjct 5943594 ACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTACAACAT 5943653 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||||| || ||||| || ||| | | ||||| Sbjct 5943654 CCAAAAGGAGTCGACACTTCATCTCGTTCTTCGTCTTCG 5943692 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || ||| | || || ||| ||||||| Sbjct 5942009 CAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTCTGAC 5942068 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| || || || |||| Sbjct 5942069 ACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGA---TCAA 5942125 Query 206293 -AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || ||||| ||||||||||| | || ||||| | ||| | ||||||||||| Sbjct 5942126 CAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAAC 5942185 Query 206350 GTCCAGAAAGAGTCTACTCTTCA 206372 |||| || |||||||||||||| Sbjct 5942186 ATCCAAAAGGAGTCTACTCTTCA 5942208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820694005447