Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 >seq3 Length=13783801 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || ||||| | ||||| | |||||||||||| Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || || ||| || || || || || || || |||||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||| | || ||| |||||||||||||| | | | | || ||| ||||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || || ||||||| || | | |||||||||| Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGG 5943192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || ||||| | ||||| | ||||||||||| | Sbjct 5941497 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCTTCC 5941556 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| |||||||| || || || || |||||| Sbjct 5941557 GACACGATCGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5941616 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | || ||| || || ||||| || | | | | || ||||| Sbjct 5941617 CAAAGACTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 5941676 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || ||||||| || | | ||||||||||| Sbjct 5941677 ATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5941723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | | |||||| | ||||| |||||||||||||| | Sbjct 5942234 ATGCAAATCTTCGTCAAGACTCTTATCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5942293 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || || ||| || || || || || || || |||||| Sbjct 5942294 GATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCAG 5942353 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || || || || |||||||| | | | | || ||||| Sbjct 5942354 CAACGTCTCATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACAAC 5942413 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || ||||||| || | | ||||||||||| Sbjct 5942414 ATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5942460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094361054240