Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 3e-11 >seq1 Length=15072434 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 147073 TGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCAC 147132 ||||| ||||| ||||||||||| || | | |||| || ||||| |||| |||| ||| Sbjct 5138951 TGGTAAAGCTGACACGAGAGCTCTCCATTGTCCACATAGAACTGACACATTGTGTGACAC 5138892 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 || ||||| |||| || |||| || ||||| || || | | | | | Sbjct 5138891 GGTGGCAGAACCATTTGTCCAAGATCCGACGGATTCCACGCGGACATAATGATTCTTCGA 5138832 Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAAC-CCACCTCAGCTGGTCCACGCCCTGGCC 147251 || || || | | |||||||| | |||||| || | || ||| || || || || || Sbjct 5138831 CTATCCGGTTGCTCCTTAATCTGTCGGATAACTTCAGC-CAACTGATCAACACCTTGTCC 5138773 Query 147252 CCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTA 147311 ||| | ||| || ||||| || | ||||||||||| ||||| || || || || Sbjct 5138772 AGAGTAATCTGTATGACAATCCACATATTTCGCCCCAAAGTGTCTCCATTGAAATCCATA 5138713 Query 147312 CACTGGCCCCAGGTCGCC 147329 ||||| || || || || Sbjct 5138712 AACTGGTCCAAGATCTCC 5138695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487948944800