Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 279 7e-70 >seq3 Length=13783801 Score = 279 bits (308), Expect = 7e-70 Identities = 492/717 (69%), Gaps = 0/717 (0%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 |||||| || |||||||| |||||| | ||| ||||||||| ||| |||||||| || Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | ||| | || ||||| |||||||| ||||| |||||||||||||| | || Sbjct 9227096 CCATTCTTGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAA 9227155 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 || ||||||| | | ||||| ||| || || || ||| | |||||| | Sbjct 9227156 CAGGTCTCTGGCACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCGAA 9227215 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 ||||| | |||||||| || || || || || | |||| || ||||| |||||||| Sbjct 9227216 GATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCTCC 9227275 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||||| | || | ||||| ||||| ||||| | ||||| || || | || ||||| Sbjct 9227276 TTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTTAGA 9227335 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | | ||||| ||||||| || | ||| | |||||||| || || | || || Sbjct 9227336 TGTTCCATTAGTTCCAGCGATCACAGATCCAGTGGCGCGAATTTTGTGAACATTGAGTCC 9227395 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 |||||||| || |||| || || |||||||| | |||||||| || || || || Sbjct 9227396 GATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCCGAG 9227455 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||| || || |||| | ||||| || || |||||| ||| || | ||||| Sbjct 9227456 AATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACGGCATGTTCC 9227515 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 || ||| || | || || || || || || | | || || | |||||| || || Sbjct 9227516 CGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATAGGT 9227575 Query 70056 TTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 || || || || ||||| ||| ||||| || | |||||||||||||| || Sbjct 9227576 CTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACATCTG 9227635 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| || || || || | | || ||||| || | ||||| || ||||| ||||| Sbjct 9227636 CTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCCAGTGTTTT 9227695 Query 70176 AAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 || || |||||| |||| ||| |||| | ||||| | || | ||||| || || Sbjct 9227696 GAATCCGAAATAGGTGTAGGAATAGTCACGATCGTAGACGATGGCGGAATTCAGCTT 9227752 Score = 185 bits (204), Expect = 1e-41 Identities = 319/461 (69%), Gaps = 3/461 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || ||||| | ||||||||| || || || || || |||||||||||||| Sbjct 9225639 GCTGGCTTGGTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAA 9225698 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| ||| | || || ||||| | ||| || ||||| || | ||||| | Sbjct 9225699 TGCATTGATGTGATACCGGCGTAGCTTGGCTTGGCCATGTGAATGTTAAGAGATTGGGAT 9225758 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| ||| | ||||| | ||| || ||||| | ||||| ||||||| || ||| Sbjct 9225759 TGATCAATGTATGCTCCACGATCAGCAGCCATCTCAATAATGTCTTTTTGAGAGATCTCC 9225818 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGGAT 68631 || | || | ||| | ||||| || ||||| | || | |||||||||||| Sbjct 9225819 CACACTGTGCGATAAAGTTCCTTGATGTCGGATGGAATTCCATCAATGTTTTGAATGGAT 9225878 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 ||| | || || | |||||| ||||||||| |||||||| ||| ||| ||| Sbjct 9225879 CCATTGTTGGCAATCAGACGATTCTTCATCTCATCAGTCCACAATCCTCTTTCCACCAAA 9225938 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | || | || ||||| || || || || || ||||| | || | |||| ||| Sbjct 9225939 TCCTTGAGCATGTGAGGATTCACAATCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAG 9225998 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 || || || ||||| || | |||||||| ||||| |||||||||||||| || ||| Sbjct 9225999 ATGTTCGAAGTGTATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCA 9226058 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 |||||||| || |||| || | ||| || | | |||||| Sbjct 9226059 GTTGGCATTGGAGCCATCAGAAGACTGTTGCGGATACCATG 9226099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908739895480