Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 95.1 1e-14 seq1 95.1 1e-14 >seq6 Length=17718942 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 44392 AAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 ||| || || ||||||||| | | ||||| ||||| |||||| | || |||| Sbjct 1430631 AAACTTGATTGGAATGAATCAGCACATGATGTGTAAATATGTTGAATTTGTCGCTGATCT 1430690 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTAT 44511 | | ||| || |||||| | |||| ||| | | ||||||||||||||||||| Sbjct 1430691 TCTGCTTGAAGAGTTGGGTTACTCCAAACGCTACAACACAAAAAACCCGTTTGATTTTAT 1430750 Query 44512 GGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||||| || || | || || || ||||||||||| |||||||||||| |||||||| Sbjct 1430751 GGAAAACATATCAATAGAGGGAAAGACAAACTTTTTCGAAAAACGCGTTTCCGAATATCA 1430810 >seq4 Length=17493829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 44392 AAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 ||| || || ||||||||| | | ||||| ||||| |||||| | || |||| Sbjct 6252924 AAACTTGATTGGAATGAATCAGCACATGATGTGTAAATATGTTGAATTTGTCGCTGATCT 6252983 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTAT 44511 | | ||| || |||||| | |||| ||| | | |||||| |||||||||||| Sbjct 6252984 TCTGCTTGAAGAGTTGGGTTACTCCAAACGCTACAACACAAAAAACCTGTTTGATTTTAT 6253043 Query 44512 GGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||||| || || | || || || ||||||||||| ||||||||||| |||||||| Sbjct 6253044 GGAAAACATATCAATAGAGGGAAAGACAAACTTTTTCTAAAAACGCGTTTCCGAATATCA 6253103 >seq1 Length=15072434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 19614 AGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAA 19673 ||| |||||||||||||| |||||| | || |||||| | || || || | ||| |||| Sbjct 7768803 AGTCCATGACACTGTTGTGAATCAATTGCTCTCAAAAATGGATGGAGTAGAACAATTGAA 7768744 Query 19674 TAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC-CTTATTAC 19732 ||||||| | || || || ||||| ||||||| || | || || || ||| || | Sbjct 7768743 TAATATTCTTGTAATCGGAATGACCAATAGACGTGATATGATTGATGAAGCTCTTCTT-C 7768685 Query 19733 GACCCGGTCGGTTGGAAATAAAGATCGAA-ATTAACTTACCCGATGAATGTGGACGTGTG 19791 | || || | |||||| | | || ||| || |||| || ||||| |||||| | Sbjct 7768684 GTCCAGGAAGATTGGAAGTCCAAATGGAAGTTTCACTT-CCTGATGAGACTGGACGACTT 7768626 Query 19792 GAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATG----ACGA 19847 ||||| | || || || || || |||| || || | || | ||||| | | Sbjct 7768625 CAAATTCTTAAAATTCACACTGCACGCATGAGAGAATACAA----TAAAATGGACCCCAA 7768570 Query 19848 TGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGG 19907 || ||| | || || ||| || ||||| |||| | ||| || ||| | || || Sbjct 7768569 CGTGGATTTGGAGGATATTTCAAAAAGGACCAAGAACTTTTCCGGTGCCGAATTGGAAGG 7768510 Query 19908 ATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | || || || |||||||| | ||||||| Sbjct 7768509 TCTCGTCAGAGCTGCCCAATCCAGTGCAATG 7768479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455966092035