Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=13783801 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || |||||||| || | |||| |||| ||| Sbjct 5941199 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCG 5941140 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | ||||||||||| ||||| || || | || || || || | Sbjct 5941139 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 5941080 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | |||| | || || | || || || || || || |||| ||| Sbjct 5941079 ATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTT 5941020 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 || |||| ||||| || ||||||||||| |||| |||| Sbjct 5941019 CCAGTCAACGTTTTGACGAAGATTTGCATGATTGCTGAAAA 5940979 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | ||||| || ||||| || ||||| ||| Sbjct 5942232 CCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAG 5942173 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || ||||| || || ||||| | || | |||||||||||| || || Sbjct 5942172 AGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 5942113 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || ||||||| |||| | | || | |||||| | |||||||| Sbjct 5942112 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACC 5942053 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| || || |||| ||| || || ||||| ||||| Sbjct 5942052 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||||||| | || || || || || || |||||||| Sbjct 5942460 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5942401 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||||||||| || || ||| | |||||||| || ||||| || || Sbjct 5942400 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGA 5942341 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| |||| | | || | || || | |||||| ||| Sbjct 5942340 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACT 5942281 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || | ||||| || || ||||||||||| Sbjct 5942280 TCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCAT 5942234 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || ||||||||||| | | | || | || ||| Sbjct 5942946 ACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCG 5942887 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | || | || || ||||| || || | ||| ||||| || | Sbjct 5942886 AGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGG 5942827 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | |||||| | ||||| || || || || || | || Sbjct 5942826 ATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTTT 5942767 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || || ||||| ||||| Sbjct 5942766 CCTGTAAGAGTCTTGACGAAGATCTGCAT 5942738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 ||||||| | || |||||||| ||||| || || | || || || || ||||||| Sbjct 5942603 TACCGGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGG 5942544 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 |||| |||| | || || | |||||| ||||| || || |||| || || |||| Sbjct 5942543 CCTTCACATTTTCGATGGTATCAGAGGCTTCGACTTCGAGGGTGATAGTCTTTCCAGTCA 5942484 Query 27226 GAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| ||||| |||||||||||| || || Sbjct 5942483 AAGTCTTCACGAAGATTTGCATACCTCCT 5942455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 236/360 (66%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 |||||||| | || ||||| | |||||| | | || || |||||||||||||| Sbjct 9227070 GGACATTCACATGGGCACATCAACGACCATTCTTGATCCTTCTCGACTCGCTTCATAAAG 9227129 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | ||| || | ||| | || ||||| ||||| || || |||||| | || | Sbjct 9227130 AGATCTGGAATCCAAAGAGCAAGGAACAGGTCTCTGGCACGTTCCTCTTCCGGTCCAGTG 9227189 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | || | | || ||| || || || || || ||||| || |||| || | || Sbjct 9227190 TTCTTGCGGAGAGATACAAACTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCA 9227249 Query 131783 ATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839 | ||| ||| ||| || || ||||||| ||||| |||| | | || ||||| || Sbjct 9227250 AATGCTCCTGGGCGTTTGTTTCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACA 9227309 Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAAT-GTAGCTGCCATT 131898 || | ||| || | ||||| | ||||||| || | || || | ||| | Sbjct 9227310 CGAAGCATTGGTATGAGTCCGTTAGATGTTCCATTAGTTCCAGCGATCACAGAT-CCAGT 9227368 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 ||| | ||||||||||| |||||||| || |||||| | ||| || || || || || Sbjct 9227369 GGCGCGAATTTTGTGAACATTGAGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACA 9227428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934363747784