Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 seq1 86.0 8e-12 >seq3 Length=13783801 Score = 102 bits (112), Expect = 1e-16 Identities = 462/735 (63%), Gaps = 57/735 (8%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||||| || | | ||||||| || || | ||||| || ||||| Sbjct 9225995 GTAGATGTTCGAAGTGTATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGA 9226054 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTC-----------TCC 110815 || ||||||||||| ||||||| ||||||||| || | ||| | | | Sbjct 9226055 AGCAGTTGGCATTGGAGCCATCAGAAGACTGTTGCGGATACCATGCCTGTAAATAAGTAG 9226114 Query 110816 TT------GATGCG----------------------------TTCCTTGAGAACA---TC 110838 || ||| || || |||| ||| | | Sbjct 9226115 TTTAATCAGATTCGAAAGAGTATTTTAATCTTACTTTGCAATTTTCTTGCGAAGAGTGGC 9226174 Query 110839 CCAGTCGTAGTTGA--GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 ||| ||| | |||| | |||| | | || ||||||| ||||| |||||| |||| Sbjct 9226175 CCAATCGCA-TTGATCGGTTGGAGTGA-CTCCCCACATATCAAATTGAAGCTGTCCTTTC 9226232 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 110956 || | ||||| || || | || || | || | |||||||||||||| || Sbjct 9226233 GATACTGGAGATCCTTCGTATGTCGAGTATGGTCCATTCAACTCAGCCAATTCACAACTG 9226292 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || |||| | |||| || |||||||| ||||| || || | || ||||||| Sbjct 9226293 GCTTCCAATGCAGCGTAGTAGATGGTTTCGAAGATTCGTTTGTTGAGATCTCTGGCTTCT 9226352 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 | ||| |||| ||| || ||| || || ||| ||||| ||||| ||||| | Sbjct 9226353 GCCGAAGTGAATGGGTAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACACCAAGC 9226412 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136 || || || | || ||||||||||| || || || ||| || ||||| | || | Sbjct 9226413 CCGATTGGGCGATGGCGCATATTAGAGTTGCGAGCCTCCTCGACTGGATAGTAGTTGACG 9226472 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 ||||| | || | |||| |||| | || || || | ||| ||||| | | Sbjct 9226473 TCAATAATCTTATTCAAATTTCTGGTTATAACTTTAGTCACCTCAGCCAGTTTGACGAAG 9226532 Query 111197 TCAAAAGTGCGAGTCTCTTCATTGACATA-CTTTGGAAGGGCGATTGATGCCAAATTGCA 111255 || || | |||| | || || | | | || || || || || | ||||| Sbjct 9226533 TCGAACTT---TTTCTCGGGGGTCACGTAGCGATTG-AGAGCAATGGAAGCAAGGTTGCA 9226588 Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315 ||| || ||||||| | | | |||||||| ||||| || || |||||||||| ||| Sbjct 9226589 AACTGCAATCTCATCTGGAGCAGAGTACTCTATGATTTCAGTGCACAAGTTGGAACACTT 9226648 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || || || | ||| | |||||| ||| ||| ||||| |||||| ||||| Sbjct 9226649 GATAGTTCCAAGATTTTGCTGGTTAGACTTGCGATTGGCGGCATCTTTGTAGGTGATGTA 9226708 Query 111376 GGGCGTCCCCGTCTC 111390 || ||| ||||| Sbjct 9226709 TGGAAGCCCGGTCTC 9226723 >seq1 Length=15072434 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| | ||||| || ||||| || || |||| |||||| || | ||||| || Sbjct 9586814 TATGGAAGAGTTGCTCCTCGATCTGGACTGGCTGCCAAGCATTTCATCGATGTTGGAGCA 9586873 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||| || ||| ||||||| || || |||||||| |||| |||||| ||| || Sbjct 9586874 GGTGTCATCGATAGCGACTATCGTGGAGAGGTCAAAGTTCTTCTTTTCAATTTCGGCGAA 9586933 Query 164724 AAAGACTTTGAGGTA 164738 || |||||||||||| Sbjct 9586934 AATGACTTTGAGGTA 9586948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031945047200