Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 >seq3 Length=13783801 Score = 127 bits (140), Expect = 3e-24 Identities = 347/529 (66%), Gaps = 3/529 (1%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||||||||| || || |||| || |||| ||||| || ||||| ||||| Sbjct 9226205 CCACATATCAAATTGAAGCTGTCCTTTCGATACTGGAGATCCTTCGTATGTCGAGTATGG 9226264 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || | | ||| |||||||| | || || || | || |||| || || ||||| || Sbjct 9226265 TCCATTCAACTCAGCCAATTCACAACTGGCTTCCAATGCAGCGTAGTAGATGGTTTCGAA 9226324 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || || || | | |||| || | ||| || | | || ||| || || Sbjct 9226325 GATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTGAATGGGTAACGCATCAACATGAA 9226384 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 ||| ||||| ||||||||||| || || ||||||||||| | ||||||||| || || Sbjct 9226385 GCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGGCGATGGCGCATATTAGAGTTGCG 9226444 Query 118583 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 118642 ||| ||| || ||||| | || || |||| | |||| | |||| |||| | ||| Sbjct 9226445 AGCCTCCTCGACTGGATAGTAGTTGACGTCAATAATCTTATTCAAATTTCTGGTTATAAC 9226504 Query 118643 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 118702 || || | ||| || || || | || |||| |||| | || || Sbjct 9226505 TTTAGTCACCTCAGCCAGTTTGACGAAGTC-GAACT--TTTTCTCGGGGGTCACGTAGCG 9226561 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 | || || || || || || || || || | ||||||| | ||| ||||||||| Sbjct 9226562 ATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTCATCTGGAGCAGAGTACTCTAT 9226621 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||||| ||||||||||| |||| ||| || || || | || | || || ||||| Sbjct 9226622 GATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAGATTTTGCTGGTTAGACTTGCG 9226681 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| ||||| |||||||| ||| ||||| ||||| Sbjct 9226682 ATTGGCGGCATCTTTGTAGGTGATGTATGGAAGCCCGGTCTCGATTTGG 9226730 Score = 107 bits (118), Expect = 2e-18 Identities = 297/447 (66%), Gaps = 14/447 (3%) Strand=Plus/Plus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 |||||||| || |||||||| |||| |||||| | || | ||||||||| | | | Sbjct 9225657 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCG 9225716 Query 117903 GAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 117962 | | | |||| | ||||| | ||| | | |||||||||||| ||| | ||| Sbjct 9225717 GCGTAGCTTGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCA 9225776 Query 117963 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGG 118022 ||||| || ||||| ||||| | || || ||| |||||||| || | || || Sbjct 9225777 CGATCAGCAGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGT 9225836 Query 118023 TTCTTAATATCATCTGGGATATCCA-CGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| || || ||| || |||| | || ||||| ||||||||| ||| | || Sbjct 9225837 TCCTTGATGTCGGATGGAAT-TCCATCAATGTTTTGAATGGATCCA---TTGTTGGCAAT 9225892 Query 118082 GA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTT--TTGAGATCCTCCACGAGA 118136 | ||| |||||| || | | ||| | || ||||| | ||||| | | Sbjct 9225893 CAGACGATTCTTCATCTCATCAGTCCACAATCC--TCTTTCCACCAAATCCTTGAGCATG 9225950 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGT 118195 || ||| |||| || || || | || || | ||| ||||| || | || Sbjct 9225951 TGAGGATTCACAATCTGGAAATCTCCAGAAAGAACACGGC-GAGAGTAGATGTTCGAAGT 9226009 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 ||||||||| | | | |||||||| || | ||||| || ||||| || || ||||| || Sbjct 9226010 GTATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGG 9226069 Query 118256 TGCCATGAGAAGGCTGTTACGGAGACC 118282 ||||| ||||| ||||| |||| ||| Sbjct 9226070 AGCCATCAGAAGACTGTTGCGGATACC 9226096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 129736 AACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAA 129795 ||||||||||||||||||||| ||||| ||||| | |||||||||||| || || || Sbjct 4093587 AACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTCCATGAAGTCGAA 4093646 Query 129796 TGGGTTCTTTGAGTTCCAAATTGC-TGGCAC-TCCAATCTGTTTGAGGAGACGATCCGAG 129853 ||| ||||| || || ||| || || ||| || | || ||| | | |||| | | Sbjct 4093647 TGGATTCTTCGACTTGTAAA--GCTTGTCACAACCGAGCTCGACGAGCAAATGATCGGCG 4093704 Query 129854 ACGTACTCAATGTACTCAGACAT 129876 || |||| ||||||| ||||| Sbjct 4093705 ACAAACTCGATGTACTGTGACAT 4093727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435145886920