Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq1 86.0 7e-12 seq2 84.2 3e-11 >seq3 Length=13783801 Score = 134 bits (148), Expect = 2e-26 Identities = 687/1086 (63%), Gaps = 71/1086 (7%) Strand=Plus/Minus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 |||| |||||| || |||||||| |||||||| ||| || | ||| ||| Sbjct 9226729 CAAATCGAGACCGGGCTTCCATACATCACCTACAAAGATGCCGCCAATCGCAAGTCTAAC 9226670 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 || | ||| | || |||||| ||||||| | || || |||||| | || | | Sbjct 9226669 CAGCAAAATCTTGGAACTATCAAGTGTTCCAACTTGTGCACTGAAATCATAGAGTACTCT 9226610 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 | |||||||| || || || ||||| || || || |||||| || ||| Sbjct 9226609 GCTCCAGATGAGATTGCAGTTTGCAACCTTGCTTCCATTGCTCTCAATCGCTACGTGACC 9226550 Query 105089 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 || |||| |||| || || | | ||||| || || || ||| | | |||| | Sbjct 9226549 CCCGAGAAAAAG---TTCGACTTCGTCAAACTGGCTGAGGTGACTAAAGTTATAACCAGA 9226493 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || | || | ||||||| || | || || || ||| ||||| || |||||| Sbjct 9226492 AATTTGAATAAGATTATTGACGTCAACTACTATCCAGTCGAGGAGGCTCGCAACTCTAAT 9226433 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | || || ||||| || || ||||| || || ||||| ||| ||||| | Sbjct 9226432 ATGCGCCATCGCCCAATCGGGCTTGGTGTCCAAGGACTCGCTGATTGCTTCATGTTGATG 9226373 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 || || |||| ||| | ||||| | || |||| || || || || ||||| Sbjct 9226372 CGTTACCCATTCACTTCGGCAGAAGCCAGAGATCTCAACAAACGAATCTTCGAAACCATC 9226313 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 || |||| || | || || |||| || ||||| ||| | |||| ||||| || Sbjct 9226312 TACTACGCTGCATTGGAAGCCAGTTGTGAATTGGCTGAGTTGAATGGACCATACTCGACA 9226253 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC 105448 | || || ||||||| || |||| |||||||||||||||||||| | || | || Sbjct 9226252 TACGAAGGATCTCCAGTATCGAAAGGACAGCTTCAATTTGATATGTGGGGA-GTCACTCC 9226194 Query 105449 AAGC-TTCACTACGACTGGGAAGCTCT---CAAGGAA----------------------- 105481 || | ||| | ||| |||| |||| |||| || Sbjct 9226193 AACCGATCAATGCGATTGGGCCACTCTTCGCAAGAAAATTGCAAAGTAAGATTAAAATAC 9226134 Query 105482 -----CGCATC------AAGGA-----------GAAGGGTCTTCGTAACAGTCTCCTCAT 105519 || ||| || | | | ||| | || |||||||| || || Sbjct 9226133 TCTTTCGAATCTGATTAAACTACTTATTTACAGGCATGGTATCCGCAACAGTCTTCTGAT 9226074 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 ||||||||||||||| || ||||| || ||||| | || || ||||||| | | || || Sbjct 9226073 GGCTCCAATGCCAACTGCTTCCACTGCTCAAATTCTCGGAAACAATGAATCCATCGAGCC 9226014 Query 105580 CTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA-- 105636 ||||| |||||||||| ||| | | || | ||||| || |||||| || Sbjct 9226013 ATACACTTCGAACATCTACTCT-CGCCGTGTTCTTTCTGGAGATTTCCAGATTGTGAATC 9225955 Query 105637 CAAGCAT-CTCGTGGATGACCT-CAAAGA-GATTGGTCTCTGGTCCAAGGATATGAAGGA 105693 | ||| ||| |||| | ||||| ||||| ||| | | || |||||| | Sbjct 9225954 CTCACATGCTCAAGGATTTGGTGGAAAGAGGATTG-----TGGACTGATGAGATGAAGAA 9225900 Query 105694 TC-TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG-TGGATATTCCAAATGAAATT 105751 || || || | | ||| ||||||||||| |||| |||| |||||| || || Sbjct 9225899 TCGTCTGATTGCCAAC-AATGGATCCATTCAAAACATTGATGGA-ATTCCATCCGACATC 9225842 Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCA 105811 ||| | | || |||||||| ||||| ||| || || | ||||| ||||| || Sbjct 9225841 AAGGAACTTTATCGCACAGTGTGGGAGATCTCTCAAAAAGACATTATTGAGATGGCTGCT 9225782 Query 105812 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGG-AAAGTCCAAC 105870 |||||||| | |||||||||| ||| | | || | ||||| ||| | | | Sbjct 9225781 GATCGTGGAGCATACATTGATCAATCCCAATCTCTTAACATTCACATGGCCAAGCCAAGC 9225722 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 | | || || | || ||||| | ||| | ||||||||||| ||||| || || || Sbjct 9225721 TACG-CCGGTATCACATCAATGCATTTCTACGGATGGAAGAAGGGACTCAAGACTGGAAT 9225663 Query 105931 GTATTA 105936 ||| || Sbjct 9225662 GTACTA 9225657 >seq1 Length=15072434 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| | ||||| || |||||||| || |||| || ||| ||| | ||||| || Sbjct 9586814 TATGGAAGAGTTGCTCCTCGATCTGGACTGGCTGCCAAGCATTTCATCGATGTTGGAGCA 9586873 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225 ||||| | ||| |||||| || || |||||||| ||||||||||| ||| || Sbjct 9586874 GGTGTCATCGATAGCGACTATCGTGGAGAGGTCAAAGTTCTTCTTTTCAATTTCGGCGAA 9586933 Query 154226 AAAGACTTTGAGGTA 154240 || |||||||||||| Sbjct 9586934 AATGACTTTGAGGTA 9586948 >seq2 Length=15279421 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||| ||||| |||||| ||||||||||| || || ||| || ||||| ||| Sbjct 11878152 TCCTTTCCACCTTGGAGACGAGTACCAAACTGTCCGATTGGAAGAAGCAGGTTGATGTTG 11878093 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || || || | ||| || | || | || ||||| || || || || ||| ||| Sbjct 11878092 TTGGAGCCAACGTAATCTTGAGCGAGATTCACAATTGTTCCCATAAGCGACTGTTCTCCG 11878033 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 || ||||| ||| | || |||||| | | ||||| || || ||||| | ||| | Sbjct 11878032 TGATGGTAAGCAGAAATTTCAGCGACAGCTCCAGCCAATTGAGCTACTTTGACTTCACGC 11877973 Query 168638 TTGAGATTCT-TGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 ||| | || | | |||||| ||| | | |||||| || || ||||||| |||||| Sbjct 11877972 TTG-TCTGCTCTCTTGAAGCACGCGAAGAGAACCTTCCGCTGTCCTGGCTTGAAACCATC 11877914 Query 168697 CGCCATGTGTGCGATAGAACGCT 168719 | | | | || || ||||||| Sbjct 11877913 CACAAGGCATGGAATTGAACGCT 11877891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260748964680