Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq1 95.1 1e-14 seq2 93.3 5e-14 >seq3 Length=13783801 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGT 55786 ||||||| |||| || || ||||||||||| | || || || | | ||||| ||| | Sbjct 9225843 TCAAGGAACTTTATCGCACAGTGTGGGAGATCTCTCAAAA-AGACATTATTGAGATGGCT 9225785 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||||||||| || ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 9225784 GCTGATCGTGGAGCATACATTGATCAATCCCAATCTCTTAACATTCACATGGCCAAGCCA 9225725 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 ||| | | || ||||| || ||||| |||||||||||||||||||| || Sbjct 9225724 AGCTACGCCGGTATCACATCAATGCATTTCTACGGATGGAAGAAGGGACTCAAGACTGGA 9225665 Query 55907 ATGTACTATCTGCGGACC 55924 ||||||||| |||| ||| Sbjct 9225664 ATGTACTATTTGCGTACC 9225647 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 152875 TGAAGCCCGAGGATCTTTTTGA---GGTTGGAAAATTCCTCATTATCGGTCACCTGTTTC 152931 ||||| ||||||||||| | | |||| | ||| |||| |||| | ||| ||| Sbjct 10144791 TGAAGTCCGAGGATCTTGATCATCGCGTTG---ACTTCAGCATTCTCGGCGATCTGCTTC 10144847 Query 152932 ACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTG 152991 || | || || || ||||| || |||||| ||||| || || || |||||| || Sbjct 10144848 ACACTTGCGTCGCGGACATTCAGCAACTTTCCTCGGAGCGGGAAGACTCCGAACTTGTCC 10144907 Query 152992 CGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATA 153051 || || |||||| || || | ||||||||| | ||| |||||||| || || || | | Sbjct 10144908 CGTCCAACAACGGAAAGTCCCGAAATAGCAAGCGTTTTGGCCGAGTCTCCTTCCGTCACA 10144967 Query 153052 AT 153053 || Sbjct 10144968 AT 10144969 >seq1 Length=15072434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 214/320 (67%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 ||| |||||||||||||| ||| |||| ||||||||| |||| ||| || ||||| Sbjct 12293020 CTCATGGTTGAACAGAATTCCATTACAAGCAAACATCTTATACGCCTCCCGATAGTTCAC 12293079 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | |||||||| ||| | | ||||| || |||| ||| || |||||||||||||| Sbjct 12293080 CACAATCCAATAGCCATACATCTTGGCGACCGCATAAGGGGATCTCGGGTAGAATGGGGT 12293139 Query 124832 GTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 || |||| | || |||| || || | | ||||||||| || || || Sbjct 12293140 CAGCTCGCTTTGTGGGATTTCTTGAACTTTTCCGTAGAGCTCCGAAGTTGAAGCTTGGTA 12293199 Query 124892 GAATTTGAATTT-TGAAATAGA----ATTCGTTTGACGAATTGCCTCCAAGATCCGAAGG 124946 |||| | ||| | |||| | ||| |||| || || | | |||||| Sbjct 12293200 GAATCGAACTTTCTCGGTTAGACGACAAGCGT-----GAATGGCGTCAAGAAGACGAAGG 12293254 Query 124947 GTTCCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGG 125006 ||||| | || || || | ||||| ||||| || | ||||| || | ||| ||||| Sbjct 12293255 GTTCCTACTGCATCGACTTCAGCGGTGTACTCCGGGAGGTCAAAGGAGACTTTGACATGA 12293314 Query 125007 GACTGGGCACCTAGGTTGTA 125026 || || || | |||| ||| Sbjct 12293315 GATTGAGCGGCGAGGTGGTA 12293334 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||||| ||| | || || || |||||||||||||| ||||| | ||| Sbjct 12292581 AACTCGCGGACACTGAACTGCTTCCCGGTGGCAATCACAAAGTCGTCTGGGGTGTCTTGT 12292640 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || || || |||||| ||||||||||| || | |||||| |||||||| || ||| Sbjct 12292641 TGAAGGATTCTCCACATTGCCTCGACGTATTCTTTCGCGTGGCCCCAGTCTCGGAGAGCA 12292700 Query 159064 TCCATGTTCCCGAGCTCGATG 159084 || ||| |||||||||||| Sbjct 12292701 CTCAGGTTGCCGAGCTCGATG 12292721 >seq2 Length=15279421 Score = 93.3 bits (102), Expect = 5e-14 Identities = 204/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTG--GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||| || ||||| || ||||| |||||| || || || ||||||| Sbjct 11878179 GTGAAGATGTAACG--AGCTGAAGCACTGTCCTTTCCACCTTGGAGACGAGTACCAAACT 11878122 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 |||| || || ||||||| |||||||| ||| ||| ||| ||||| | ||||| Sbjct 11878121 GTCCGATTGGAAGAAGCAGGTTGATGTTGTTGGAGCCAACGTAATCTTGAGCGAGATTCA 11878062 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 |||| || ||| || | ||| ||||| || || || | || |||| || Sbjct 11878061 CAATTGTTCCCATAAGCGACTGTTCTCCGTGATGGTAAGCAGAAATTTCAGCGACAGCTC 11878002 Query 152207 CCGCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 | ||||| || || || || | || || | ||| | | |||||| || ||| | | Sbjct 11878001 CAGCCAATTGAGCTACTTTGACTTCACGCTTGTCTGCT--CTCTTGAAGCACGCGAAGAG 11877944 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| ||||| ||| || ||||| ||||| | | ||||| ||||||| | |||| Sbjct 11877943 AACCTTCCGCTGTCCTGGCTTGAAACCATCCACAAGGCATGGAATTGAACGCTCGTTGTC 11877884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 191/284 (67%), Gaps = 15/284 (5%) Strand=Plus/Plus Query 152782 CCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGC 152841 || |||||||| || || || ||||| || | |||||||||||| ||||| || Sbjct 13135263 CCTTTGATGTGAGAGCCATCCTGATCCTGATCAGCCATGATCATCAGCTTCCCGTATCGA 13135322 Query 152842 AG-GTCACGTAGTGACCCGTAGAC-----CTTTCCATGT---TGAAGCCCGAGGATCTTT 152892 || ||| | | | | | | || |||| || | ||||| ||||||||||| Sbjct 13135323 AGTGTCCTGAACTCATCATCAAACTCGTACTTTAAATCTCTCTGAAGTCCGAGGATCTTG 13135382 Query 152893 TTGA---GGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACA 152949 | | |||| | ||| |||| |||| | ||| ||||| | || || || ||| Sbjct 13135383 ATCATCGCGTTG---ACTTCAGCATTCTCGGCGATCTGCTTCACACTTGCGTCGCGGACA 13135439 Query 152950 TTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGA 153009 || || |||||| ||||| || || || |||||| || || || |||||| || Sbjct 13135440 TTCAGCAACTTTCCTCGGAGCGGGAAGACTCCGAACTTGTCCCGTCCAACAACGGAAAGT 13135499 Query 153010 CCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAAT 153053 || | ||||||||| | ||| |||||||| || || || | ||| Sbjct 13135500 CCCGAAATAGCAAGCGTTTTGGCCGAGTCTCCTTCCGTCACAAT 13135543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215952118600