Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 >seq3 Length=13783801 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| | ||||| ||||||||||||||||||||||| | Sbjct 5942005 AATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTC 5942064 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| || ||||||| || || || |||||||| || || || ||||| || Sbjct 5942065 TGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGATCA 5942124 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || ||||| || |||||||||||||||| ||||| || | || || || Sbjct 5942125 ACAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAA 5942184 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || ||||||||| | || | ||||| || || ||| Sbjct 5942185 CATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGAGGAGGA 5942233 Score = 168 bits (186), Expect = 8e-37 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || || || || ||||| ||||| || | Sbjct 5943472 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCG 5943531 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || ||||| ||||| ||||||||||| || ||||| ||| Sbjct 5943532 GACACCATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAGGGAATCCCACCAGATCAG 5943591 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || |||||||| ||||| |||||||||| || || ||| | || || || Sbjct 5943592 CAACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTACAAC 5943651 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAA 27643 |||||||||| || || |||||||| || | ||||||||||| ||| | |||||| Sbjct 5943652 ATCCAAAAGGAGTCGACACTTCATCTCGTTCTTCGTCTTCGCGGAGGAGACATTTAAA 5943709 Score = 167 bits (184), Expect = 3e-36 Identities = 160/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| |||| ||| ||||| || || || || || || | Sbjct 5942233 AATGCAAATCTTCGTCAAGACTCTTATCGGAAAGACCATCACCCTCGAAGTCGAAGCCTC 5942292 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||||| || |||||||||||||| |||||||||||||| || Sbjct 5942293 CGATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCA 5942352 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || ||||| ||||| ||||| || | || ||||| | ||||| || Sbjct 5942353 GCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACAA 5942412 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 |||| |||||||| ||||||||| Sbjct 5942413 CATCCAGAAGGAATCAACTCTTCAT 5942437 Score = 159 bits (176), Expect = 4e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| ||||| ||| | || || || ||||| || || ||||| ||| | Sbjct 5940988 ATCATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCT 5941047 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||| | |||| | || || || || || |||||||| |||||||| ||||| Sbjct 5941048 TCCGATACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGAT 5941107 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 5941108 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTAC 5941167 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||| |||||||| |||||||| | || | |||||| | || ||| Sbjct 5941168 AACATCCAGAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTAGAGGAGGA 5941218 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| ||||| || ||||| || || || ||||| || | Sbjct 5942737 AATGCAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTC 5942796 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| || ||||||| || || || ||||| || || || || ||||| || Sbjct 5942797 TGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCA 5942856 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || | || || || || |||||||||||||||| |||||||| | ||||| || Sbjct 5942857 GCAACGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACAA 5942916 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | |||| |||||||| || || ||| | || | ||||| Sbjct 5942917 TATCCAGAAGGAATCAACCCTCCATTTGGTGCTCCGTCT 5942955 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || |||||||| || || || || || | | Sbjct 5942462 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCCTCGAAGTCGAAGCCTCT 5942521 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || || |||||||| ||||| || ||||| ||| Sbjct 5942522 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 5942581 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || ||||| |||| Sbjct 5942582 CAGCGTCTTATCTTTGCCGGTA 5942603 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | || || ||||| || || ||||| ||||| | Sbjct 5941218 AATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTTGAAGTTGAAGCTTC 5941277 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||||| || ||||| |||||||||||||| || ||||| || Sbjct 5941278 CGACACGATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 5941337 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||||| || |||||||||| Sbjct 5941338 GCAGCGTCTTATCTTTGCTGGTA 5941360 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || || || || || | Sbjct 5941725 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5941784 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| || || || |||||||| |||||||| ||||| ||| Sbjct 5941785 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941844 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||| | || ||||||||||||| Sbjct 5941845 CAGAGACTTATTTTTGCTGGTA 5941866 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||||||||| || || || ||| | Sbjct 12978521 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCTTCC 12978462 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || || |||||||||||||| || ||||| ||| Sbjct 12978461 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 12978402 Query 27526 CA 27527 || Sbjct 12978401 CA 12978400 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||| ||||||||| || |||||||| ||||||||||| ||||| | ||||| || Sbjct 9225648 GTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGAT 9225707 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| || | || || ||||| ||||| ||||| || || ||| ||| Sbjct 9225708 GTGATACCGGCGTAGCTTGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATG 9225767 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 | || |||||||| || ||||| |||||||| ||||| | || ||||| ||||| Sbjct 9225768 TATGCTCCACGATCAGCAGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTG 9225827 Query 80218 CGATA 80222 ||||| Sbjct 9225828 CGATA 9225832 Score = 95.1 bits (104), Expect = 1e-14 Identities = 374/574 (65%), Gaps = 17/574 (3%) Strand=Plus/Plus Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG-TCAGGGAT 81251 |||||||||| ||| || || ||||| || |||||| |||| | || || || Sbjct 9227082 GGGCACATCAACGACCATTCTTGATCCTTCTCGACTCGCTTCAT-AAAGAGATCTGGAAT 9227140 Query 81252 CCAGAGGGCGGTGAACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCA 81310 ||| || || ||||||||| | |||| || |||| || || ||| ||| | Sbjct 9227141 CCAAAGAGCAAGGAACAGGTCTCTGGCA-CGTTCCTCTTCCGGTCCAGTGTTCTTGCGGA 9227199 Query 81311 ACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCT 81370 | ||| || | ||| || || |||||||||||||| || | || | | || Sbjct 9227200 GAGATACAAACTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTG 9227259 Query 81371 TGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAG 81427 ||| | || || || | || ||||| ||||| || | ||||| | ||| | Sbjct 9227260 GGCGTTTGTTTCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTG 9227319 Query 81428 GGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCT 81487 | |||| || | || || || || || |||| || || ||||||| | | Sbjct 9227320 GTATGAGTCCGTTAGATGTTCCATTAGTTCCAGCGATCACAGATCCAGTGGCGCGAATTT 9227379 Query 81488 TGCTG---ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 || || |||| || ||||| || || | | |||||||| |||||||| | |||| Sbjct 9227380 TG-TGAACATTG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCA 9227436 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCA-TGTCAAGCAAGAAACAGCTTGAC 81603 || || || ||||| ||| |||| ||| |||| || | ||| || ||| Sbjct 9227437 ATGTATCGTAGATTCCGAGAATGGAGTCTTCACTCATTGTC-AGAAGGAAGCATGAAGAC 9227495 Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663 |||||||| | || || | |||||| || ||||||| ||| || | | ||||| Sbjct 9227496 ATCTGAGGACGGCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGC 9227555 Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATA 81723 | |||||||| | |||||| || | || | |||||| || || || || || ||| Sbjct 9227556 TCCGACATCAGATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATA 9227615 Query 81724 GCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756 | |||||||| ||||| | ||| ||||| |||| Sbjct 9227616 GAAACACGCATCAACATCTGCTGTGGGCG-CTCG 9227648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310350097840