Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 >seq3 Length=13783801 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| ||| ||||||||||||| || ||| | || Sbjct 5942006 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTCT 5942065 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| ||||| || ||||| |||||| Sbjct 5942066 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAA 5942125 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| || ||| | || || | || | |||||||||||| Sbjct 5942126 CAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAAC 5942185 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||||||||| | ||| | || || || || Sbjct 5942186 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGAGGAGGAAT 5942235 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || || |||||||| ||| | || Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || ||||||||||| ||||| || ||||| ||||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| |||||| | |||||| || ||| | ||||| |||||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||||||||| | ||| || | || || || Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGGTAT 5943195 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| | || || || || |||||| | || Sbjct 5942738 ATGCAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTCT 5942797 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||||||||| || ||||| ||||| Sbjct 5942798 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAG 5942857 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || ||| | || || | ||| |||| || ||||| Sbjct 5942858 CAACGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 5942917 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || ||||| || ||| | |||||||| Sbjct 5942918 ATCCAGAAGGAATCAACCCTCCATTTGGT 5942946 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || || | || ||||| || || ||| | || Sbjct 5943472 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCG 5943531 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| ||||| || || || || || || ||||| ||||| Sbjct 5943532 GACACCATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAGGGAATCCCACCAGATCAG 5943591 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || || | || || | || | |||||||||||| Sbjct 5943592 CAACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTACAAC 5943651 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||||||||| | ||| | ||| | ||| | || || || Sbjct 5943652 ATCCAAAAGGAGTCGACACTTCATCTCGTTCTTCGTCTTCGCGGAGG 5943698 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | || || |||||||| ||| | ||| Sbjct 5941219 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTTGAAGTTGAAGCTTCC 5941278 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || ||||||||||| || || || ||||| ||||| Sbjct 5941279 GACACGATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 5941338 Query 27108 CAGCGT 27113 |||||| Sbjct 5941339 CAGCGT 5941344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918361944640