Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 >seq1 Length=15072434 Score = 111 bits (122), Expect = 1e-19 Identities = 298/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 ||||| |||| || ||||||||||| || |||||||| || ||||||| | || |||| Sbjct 5138522 TTCCGTTGCTTACCACGAAACGTGTCTATTGGAAGGGAGTTCTCGAGGAATTACTTTGGT 5138581 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGG-----GTGAAGATCTG 34335 | | || | || | | ||| || | || | |||||||| || Sbjct 5138582 TTATTTCTGGATCGAC-----CGATGGAAAGCTTTTGATGGAGAAAAATGTGAAGATTTG 5138636 Query 34336 GGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGG 34395 ||| |||| ||| | || || ||||| | || || | ||||| || || || Sbjct 5138637 GGAGAAAAACGGCGATCGCGCGTTCCTTGACAATCTCGGATTTACGTCTCGTGAAGAAGG 5138696 Query 34396 CGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAG 34455 || | || || || || || || || |||||||||||||||||| | ||| || | Sbjct 5138697 AGATCTTGGACCAGTTTATGGATTTCAATGGAGACACTTTGGGGCGAAATATGTGGATTG 5138756 Query 34456 CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT-CGACACCTTGA 34514 | | || || || ||||| || | || ||| || | || || ||||| || | Sbjct 5138757 TCATACAGATTACTCTGGACAAGGTGTTGATCAGTTGGCTGAAGTTATCCGACAGATT-A 5138815 Query 34515 AGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTC 34574 || | | || ||| |||| ||| | |||| ||||||||| ||| |||||| | Sbjct 5138816 AGGAGCAACCGGATAGTCGAAGAATCATTATGTCCGCGTGGAATCCGTCGGATCTTGGAC 5138875 Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634 |||| || || ||||| ||||| | || || ||||| || | ||||| ||||| | Sbjct 5138876 AAATGGTTCTGCCACCGTGTCACACAATGTGTCAGTTCTATGTGGACAATGGAGAGCTCT 5138935 Query 34635 CCTGCCAGCTCTATCAACGATCGGGAGACATGG 34667 | || ||||| || |||||| ||||| |||| Sbjct 5138936 CGTGTCAGCTTTACCAACGAAGTGGAGATATGG 5138968 Score = 111 bits (122), Expect = 1e-19 Identities = 298/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATT 6737 |||| ||||| |||||| || ||||| || || ||||| ||||| | || ||||| | Sbjct 5138968 CCATATCTCCACTTCGTTGGTAAAGCTGACACGAGAGCTCTCCATTGTCCACATAGAACT 5138909 Query 6738 GGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGC 6797 | || | ||||| ||||| || || |||| | |||||| ||| ||||||||| Sbjct 5138908 GACACATTGTGTGACACGGTGGCAGAACCATTTGTCCAAGATCCGACGGATTCCACGCGG 5138849 Query 6798 ACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG-ATCACGTACTGCAGC 6856 |||| | ||| |||| ||| || | | ||| || ||||| || || | || | Sbjct 5138848 ACATAATGATTCTTCGACTATCCGGTTGCTCCTT-AATCTGTCGGATAACTTCAGCCAAC 5138790 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 || || | || ||||| || || || | | | || ||| | ||||||||||||| Sbjct 5138789 TGATCAACACCTTGTCCAGAGTAATCTGTATGACAATCCACATATTTCGCCCCAAAGTGT 5138730 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 ||||| || || || || || || || | || || || || ||||| | || || | Sbjct 5138729 CTCCATTGAAATCCATAAACTGGTCCAAGATCTCCTTCTTCACGAGACGTAAATCCGAGA 5138670 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC-----CCCCCGGGACG 7031 ||||| || || | ||| |||| ||||| |||||||| | || | Sbjct 5138669 TTGTCAAGGAACGCGCGATCGCCGTTTTTCTCCCAAATCTTCACATTTTTCTCCATCAAA 5138610 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 || ||| | | || | || | ||||| || | ||||||| || |||| Sbjct 5138609 AGCTTTCCATCG-----GTCGATCCAGAAATAAACCAAAGTAATTCCTCGAGAACTCCCT 5138555 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 |||| || ||||||||||| || |||| ||||| Sbjct 5138554 TCCAATAGACACGTTTCGTGGTAAGCAACGGAA 5138522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262360777040