Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 179 9e-40 seq5 96.9 8e-15 >seq3 Length=13783801 Score = 179 bits (198), Expect = 9e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || || |||||||| || |||| |||||| | || ||||| |||||| Sbjct 5942436 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCGAGCTGC 5942377 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || ||||| || || ||||||| ||||||||||||||| ||||| Sbjct 5942376 TTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGAATCTTG 5942317 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| |||||||| || ||| ||| || ||||| ||||| |||||||| | Sbjct 5942316 GCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGATA 5942257 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| || || | |||||| Sbjct 5942256 AGAGTCTTGACGAAGATTTGCATT 5942233 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||||||||| ||||| | || || | ||||| || || ||| Sbjct 5942208 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTCGAGTTGC 5942149 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | || ||||| || || || | ||||||||||| |||||||| Sbjct 5942148 TTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 5942089 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || || |||||||| ||||||||| ||||| || |||||||| || Sbjct 5942088 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTTTCCGGTC 5942029 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 | |||||| || || | ||||||| Sbjct 5942028 AAAGTCTTGACGAAGATCTGCATT 5942005 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || ||||| || ||||| ||||||||||| ||||| | || || Sbjct 5943692 CGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTG 5943633 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || |||||||| || || ||||| | ||||| || || || || | ||| Sbjct 5943632 CGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCC 5943573 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| |||||||| || ||| || || || |||||||| || ||| ||||||||| Sbjct 5943572 TCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGA 5943513 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || | |||||| || || | |||||| Sbjct 5943512 GTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||||||||| || || | ||||| | || ||||| || || Sbjct 5943168 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGT 5943109 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || | || || || || || | |||||||||||| || ||||| Sbjct 5943108 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTG 5943049 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || |||||||| |||||| ||| || || || ||||| |||||||| || Sbjct 5943048 GCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5942989 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 5942988 AATGTCTTGACGAAGATCTGCAT 5942966 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || || |||||||| || |||| |||||| | || || || |||||| Sbjct 5941699 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 5941640 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||||||||| | ||| || || || || | |||||| || || || ||||| Sbjct 5941639 TTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTA 5941580 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || |||||||| ||||| || ||| || || || ||||| |||||||| || Sbjct 5941579 GCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5941520 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 5941519 AATGTCTTGACGAAGATCTGCAT 5941497 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || || |||||||| || || | ||||| | || || Sbjct 5941202 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 5941143 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || || |||| |||||||||||| Sbjct 5941142 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 5941083 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || ||||||||||| || || || ||||| || ||||| || Sbjct 5941082 TGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTT 5941023 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || || || | ||||| Sbjct 5941022 TTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || |||||||| || || || || || || | |||||||||||| |||||||| Sbjct 5942601 CCGGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCC 5942542 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||||||||| |||||| ||| || ||||| ||||| |||||||| || | | Sbjct 5942541 TTCACATTTTCGATGGTATCAGAGGCTTCGACTTCGAGGGTGATAGTCTTTCCAGTCAAA 5942482 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 5942481 GTCTTCACGAAGATTTGCAT 5942462 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| ||||| | || || || || |||| |||||||||||| |||||||| Sbjct 5943333 CCAGCGAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5943274 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || |||||||||||||| ||| ||| || ||||| ||||| |||||||| || | Sbjct 5943273 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5943214 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 5943213 GTCTTGACGAAGATCTGCAT 5943194 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || ||||| | || || || || |||| |||||||||||| |||||||| Sbjct 5941864 CCAGCAAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5941805 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || |||||||||||||| ||| ||| || ||||| ||||| |||||||| || | Sbjct 5941804 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5941745 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 5941744 GTCTTGACGAAGATCTGCAT 5941725 >seq5 Length=20924180 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||||||||||||||| |||||||| ||||||||| | ||||||| | || || || Sbjct 6434801 CTTCCAAAGAAGCACGGTAGAGGAGGTCAATCTGCTGTCCGTTTTGCTCGTCTCCGTAAT 6434860 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 || ||| ||||||| ||| | | ||||| || || || | | | |||||||| Sbjct 6434861 GAGAAGCGGCACAATTACGTCCGTAAAGTAGCTGAAAATTCGGTGGAACAATTTATCAAG 6434920 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAG 139986 || ||||| | ||| |||| || || | || ||| ||||| ||||||||| || Sbjct 6434921 AACGACAAGGTTACAGTTGCTGGACTTATTCTTGCTGGTAGTGCAGATTTCAAGACAGAG 6434980 Query 139987 CTCCTGGAATCTGACTTTTTTGA 140009 | ||||||| | ||||| Sbjct 6434981 TTGGGACAATCTGATATGTTTGA 6435003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151896038555