Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 seq7 102 2e-16 >seq3 Length=13783801 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| || |||| ||||| || | || || | || || Sbjct 5941202 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 5941143 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| |||||||||||| Sbjct 5941142 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 5941083 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||||||||| || || | ||||| || | ||||| || Sbjct 5941082 TGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTT 5941023 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||| | ||| | |||||| Sbjct 5941022 TTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||||| |||||||||| | ||| | ||||| || || ||| Sbjct 5942208 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTCGAGTTGC 5942149 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct 5942148 TTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 5942089 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || || ||||| || | ||| || || | || || ||||| || ||| Sbjct 5942088 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTTTCCGGTC 5942029 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 ||||| || | ||| | |||||| Sbjct 5942028 AAAGTCTTGACGAAGATCTGCATT 5942005 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| || |||| ||||| || | | || | || ||||| |||||| Sbjct 5942436 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCGAGCTGC 5942377 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| || ||||| || || || ||||| ||||||||||| || ||||| Sbjct 5942376 TTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGAATCTTG 5942317 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| |||||||| || |||| ||| || || | ||||| ||||| || | Sbjct 5942316 GCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGATA 5942257 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||| || | ||| | ||||||| Sbjct 5942256 AGAGTCTTGACGAAGATTTGCATT 5942233 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| || |||| |||||| || | | || | ||||| || || ||| Sbjct 5942940 TGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGC 5942881 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | ||||| || || || || |||||||| |||||||||||||| Sbjct 5942880 TTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 5942821 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || || ||||| || | |||||| || | |||||| ||||| || || Sbjct 5942820 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTTTCCTGTA 5942761 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||| || | ||| | |||||| Sbjct 5942760 AGAGTCTTGACGAAGATCTGCATT 5942737 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||||| ||||| |||| | || | || ||||| || || Sbjct 5943168 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGT 5943109 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| |||| || || || || || || |||||||||||||| ||||| Sbjct 5943108 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTG 5943049 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| |||||||| || |||| ||| || || | ||||| ||||| || ||| Sbjct 5943048 GCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5942989 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 5942988 AATGTCTTGACGAAGATCTGCAT 5942966 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| || |||| ||||| || | | || | || || || |||||| Sbjct 5941699 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 5941640 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||||| ||| || || || || || ||||| || ||||| ||||| Sbjct 5941639 TTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTA 5941580 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| |||||| ||||| || | ||| || || | ||||| ||||| || ||| Sbjct 5941579 GCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5941520 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 5941519 AATGTCTTGACGAAGATCTGCAT 5941497 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || |||||||| || || || || || || || |||||||||||||||||||| | Sbjct 5942601 CCGGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCC 5942542 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||| || |||| ||| || || | ||||| ||||| || |||||| Sbjct 5942541 TTCACATTTTCGATGGTATCAGAGGCTTCGACTTCGAGGGTGATAGTCTTTCCAGTCAAA 5942482 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 5942481 GTCTTCACGAAGATTTGCAT 5942462 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||| ||||||| || || || || ||||| |||||||||||||||||||| | Sbjct 5943333 CCAGCGAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5943274 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||||||| |||| ||| || || | ||||| ||||| || ||||| Sbjct 5943273 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5943214 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 5943213 GTCTTGACGAAGATCTGCAT 5943194 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || ||||||| || || || || ||||| |||||||||||||||||||| | Sbjct 5941864 CCAGCAAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5941805 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||||||| |||| ||| || || | ||||| ||||| || ||||| Sbjct 5941804 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5941745 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 5941744 GTCTTGACGAAGATCTGCAT 5941725 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| |||||||| || || || || || || || || ||||||||||| ||||| | Sbjct 5941358 CCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCC 5941299 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||| ||||| || | ||| || || | ||||| ||||| || |||||| Sbjct 5941298 TTGACGTTCTCGATCGTGTCGGAAGCTTCAACTTCAAGTGTGATGGTCTTTCCAGTCAAA 5941239 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 5941238 GTCTTGACAAAGATCTGCATT 5941218 >seq7 Length=13794 Score = 102 bits (112), Expect = 2e-16 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||||||||||||||| || ||||||||||||| | ||||| ||||| Sbjct 8595 ATACTTCAGGATGACCAAAAAATCAAAACAAATGTTGATAAATAAGAGGATTACCTCCAG 8536 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||||||||| |||||| ||||| | ||||||||| |||| Sbjct 8535 TTCTTGGATCAAAAAATGAAGTATTTAAATTACGATCAGTTAACAACA 8488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531093044858