Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 >seq6 Length=17718942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/328 (67%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| |||||||| || || |||||||| || || || || || |||| || || |||| Sbjct 1430812 TTTGATATTCGGAAACGCGTTTTTCGAAAAAGTTTGTCTTTCCCTCTATTGATATGTTTT 1430753 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT---TTCACACTTTAGAGCTACAA 4374 |||||||||||||||| || ||| |||||| |||| | || | | || ||| Sbjct 1430752 CCATAAAATCAAACGGGTTTTTTGTGTTGTAGCGTTTGGAGTAACCC---AACTCTTCAA 1430696 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAATTCCAATT 4433 ||| | ||||| |||||||| | ||| | | ||| | || | | || |||||||| Sbjct 1430695 GCAGAAGATCAGCGACAAATTCAACATATTTACACATCATGTGCTGA-TTCATTCCAATC 1430637 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || | || || | | | | ||| |||||||| | |||| || |||| Sbjct 1430636 AAGTTTGTGGGCAGGGATTCTCGAACAAAATCTTGTTCAACCAACACGGACTCGTTGATA 1430577 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCA-AACAATAAACACGC 4552 || ||| | || | | ||||| | | ||||| | | || | | |||||| Sbjct 1430576 ATTTCTGTGATGCGCGACTCTGCGGGTTTCCTGA-TAAGTTTAGAGAAGAGAAGACACGC 1430518 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTG 4580 |||||| | |||||||||||||||||| Sbjct 1430517 AAAATCTCTGTGCAAACCTTCGTCTCTG 1430490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049563567331