Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 260 2e-64 >seq3 Length=13783801 Score = 260 bits (288), Expect = 2e-64 Identities = 488/717 (68%), Gaps = 0/717 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||| || || |||||||| |||||| | ||| || |||||| |||||||||||| || Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || ||| | || ||||| |||||||||||||| || ||||| ||||||| || Sbjct 9227096 CCATTCTTGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAA 9227155 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 || |||| || | | ||||| ||| || ||||| ||| | |||||| | Sbjct 9227156 CAGGTCTCTGGCACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCGAA 9227215 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 ||||| | |||||||| || || || || || | |||| || ||||| || ||||| Sbjct 9227216 GATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCTCC 9227275 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 ||||| | ||| | || || ||||| || || | | |||||| || | |||||||| Sbjct 9227276 TTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTTAGA 9227335 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 ||||||||| ||||||| || | |||| | |||||||| || || | || Sbjct 9227336 TGTTCCATTAGTTCCAGCGATCACAGATCCAGTGGCGCGAATTTTGTGAACATTGAGTCC 9227395 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 |||||||| || | || || || ||||| || | ||||||||||||||||| || Sbjct 9227396 GATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCCGAG 9227455 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || ||| || |||| | ||||| || || |||||| ||| || | ||||| Sbjct 9227456 AATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACGGCATGTTCC 9227515 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 | ||| || | || || || ||||| || | | || || | ||||| || || Sbjct 9227516 CGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATAGGT 9227575 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || || || || || || | ||| ||||| | | |||||||||||||| || Sbjct 9227576 CTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACATCTG 9227635 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||| || | || || ||| || ||||| || | | ||| || |||| ||||| Sbjct 9227636 CTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCCAGTGTTTT 9227695 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640 || || |||||| |||| ||| |||| | ||||| | || | ||||| || || Sbjct 9227696 GAATCCGAAATAGGTGTAGGAATAGTCACGATCGTAGACGATGGCGGAATTCAGCTT 9227752 Score = 192 bits (212), Expect = 8e-44 Identities = 340/495 (69%), Gaps = 3/495 (1%) Strand=Plus/Plus Query 76769 ATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||||||||| || || |||| || | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 ||||| || || ||| ||||||||||||||||||| ||| | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || | ||| || ||||| || | || || |||||| ||| | ||||| | |||||| Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||| | |||||| ||||||| || ||||| | || ||| || ||||| Sbjct 9225785 AGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGAT 9225844 Query 77009 ATCATCTGGAAGG---TTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 || ||||| | | ||||||||||| ||| | | || | |||||| Sbjct 9225845 GTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCTT 9225904 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || |||||| |||||||| || || ||| | | || | |||||||| || || Sbjct 9225905 CATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAAT 9225964 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 || || |||||||| | || | |||| ||| || || || ||||| || | || Sbjct 9225965 CTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGGA 9226024 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 |||||||||||| | |||||||||||| |||||||||||||| || |||| || | ||| Sbjct 9226025 TTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 9226084 Query 77246 ATTTCTGAGACCATG 77260 || | || |||||| Sbjct 9226085 GTTGCGGATACCATG 9226099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668739216480