Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 244 2e-59 >seq3 Length=13783801 Score = 244 bits (270), Expect = 2e-59 Identities = 487/720 (68%), Gaps = 6/720 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || |||||||| |||||| | || ||||||||| || |||||||| || Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || ||| | || || || |||||||||||||| || ||||| ||||||| || Sbjct 9227096 CCATTCTTGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAA 9227155 Query 76639 TAGATCTCGGGTTCTACGT---TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTC 76695 || |||| || |||| ||||| ||| || ||||| ||| || ||||| Sbjct 9227156 CAGGTCTCTGG---CACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTC 9227212 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACC 76755 | ||||| | |||||||| || || || || || | | || || ||||| || || Sbjct 9227213 GAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCC 9227272 Query 76756 TCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTT 76815 ||| ||||| | ||| | ||||| ||||| || || | | |||||| || | ||||| Sbjct 9227273 TCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTT 9227332 Query 76816 AGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAG 76875 |||||| ||||| ||||||| || | |||| || ||||| || || | || Sbjct 9227333 AGATGTTCCATTAGTTCCAGCGATCACAGATCCAGTGGCGCGAATTTTGTGAACATTGAG 9227392 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 || |||||||| || |||| || || |||||||| | |||||||| || ||||| || Sbjct 9227393 TCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCC 9227452 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 || || || |||| | ||||| || || |||||| ||| || | || Sbjct 9227453 GAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACGGCATGT 9227512 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 ||| | ||| || | || || || ||||| || | | || || | ||||| || Sbjct 9227513 TCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATA 9227572 Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 || || || | | ||||| | ||| ||||| | || |||||||||||||| Sbjct 9227573 GGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACAT 9227632 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||| || || || ||| ||| || ||||| || | | ||| || |||| || Sbjct 9227633 CTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCCAGTGT 9227692 Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 ||| || || |||||| |||| ||| |||| | ||||| | || | ||||| || || Sbjct 9227693 TTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTAGACGATGGCGGAATTCAGCTT 9227752 Score = 215 bits (238), Expect = 7e-51 Identities = 689/1070 (64%), Gaps = 58/1070 (5%) Strand=Plus/Plus Query 75364 ATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||||||||| ||||| |||| | | | ||||| || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 ||||| || || ||| ||||||||||||||||||| ||| | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || | ||| || ||||| || | || || |||||| ||| | ||||| | |||||| Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | |||||| ||||||| || ||||| | || ||| || ||||| Sbjct 9225785 AGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGAT 9225844 Query 75604 ATCATCTGGAAG---ATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 || ||||| || | |||||||||||||| | | || | |||||| Sbjct 9225845 GTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCTT 9225904 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 ||||||||| |||||||| ||| || ||| | | || | |||||||| ||||| Sbjct 9225905 CATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAAT 9225964 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 || || |||||||| | || | |||| ||| || || || ||||| || | || Sbjct 9225965 CTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGGA 9226024 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 |||||||||||| | |||||||||||| |||||||| ||||| || |||| || | ||| Sbjct 9226025 TTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 9226084 Query 75841 ATTTCTGAGACCATG--TGT---------------TCTGATT-------------TTATC 75870 || | || |||||| ||| || |||| | ||| Sbjct 9226085 GTTGCGGATACCATGCCTGTAAATAAGTAGTTTAATCAGATTCGAAAGAGTATTTTAATC 9226144 Query 75871 TT--TTAGATATTT----------------CCAATCCCAAAGATCTGATGGTACAACATC 75912 || || | |||| |||||| || |||| | ||| || | Sbjct 9226145 TTACTTTGCAATTTTCTTGCGAAGAGTGGCCCAATCGCATTGATCGGTTGGAGTGACTCC 9226204 Query 75913 CCAGAGATCGTATTGTAGAATTCCGTT-GCTAGCATATGATCCATTATATGTTTCGTAAG 75971 ||| | ||| |||| || ||| || | || | ||||| | ||||| ||| | Sbjct 9226205 CCACATATCAAATTGAAGCTGTCCTTTCGATACTGGA-GATCCTTCGTATGTCGAGTATG 9226263 Query 75972 TCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGA 76031 || | | ||||| | ||| ||||| || || || ||| |||| || || ||||||| Sbjct 9226264 GTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAATGCAGCGTAGTAGATGGTTTCGA 9226323 Query 76032 AAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAA 76091 | || || || |||||| ||||| | || || ||| | | | || | Sbjct 9226324 AGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTGAATGGGTAACGCATCAACATGA 9226383 Query 76092 ATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTT 76151 | ||| || ||||| || || |||| || || || | ||| | | |||| || | Sbjct 9226384 AGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGGCGATGGCGCATATTAGAGTTGC 9226443 Query 76152 CAGCTTC-TGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210 ||| || | || | || || || || | || ||||| ||||| | ||||||| | Sbjct 9226444 GAGCCTCCTCGACT-GGATAGTAGTTGACGTCAATAATCTTATTCAAATTTCTGGTTATA 9226502 Query 76211 ACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA---TCACAAACATA 76267 |||||| ||| || ||||||| || || || ||| || |||| | | Sbjct 9226503 ACTTTAGTCACCTCAGCCAGTTTGACGAAGTCGAACTTTTTCTCGGGGGTCACGTAGCGA 9226562 Query 76268 TTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATT 76327 || ||||| || || || || || ||||| || | ||||| | | | || | ||| Sbjct 9226563 TTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTCATCTGGAGCAGAGTACTCTATG 9226622 Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 || || ||||| | || |||||||||||||||||||||||| ||||| Sbjct 9226623 ATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAGATTTTGCTGGTT 9226672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934337618240