Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-28 >seq3 Length=13783801 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || | ||||||||||||||| |||||||||||||| |||| | || Sbjct 5943186 CTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTA 5943127 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||| ||||||||||| || |||||||| || | | ||||||| Sbjct 5943126 CGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCT 5943067 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || || ||| |||| | | | || || || |||||||| Sbjct 5943066 TCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGT 5943007 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | ||||| ||||||| |||||| Sbjct 5943006 GTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5942966 Score = 138 bits (152), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||||||| ||||||||||||||||||| | ||| | Sbjct 5942224 GAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACG 5942165 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||| ||||| | | ||| || || | | ||| ||| Sbjct 5942164 GCCATCCTCGAGTTGCTTT--CCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCT 5942107 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || || || |||| | |||| ||| || || |||||| Sbjct 5942106 TCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGA 5942047 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || | |||||| ||||||| ||||||| Sbjct 5942046 GTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || ||||| ||||||||||||||||||| || ||| | ||||| Sbjct 5943683 AGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCC 5943624 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| | | ||||| || | | |||||| ||||| | Sbjct 5943623 TCGAGCTGCTTT--CCAGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTAT 5943566 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| ||||||| |||| | | |||| ||| || || || ||||| || | Sbjct 5943565 CCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGG 5943506 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || | |||||| ||||||| |||||| Sbjct 5943505 TTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||||||||| || || || ||||||||||| || | | || | || || Sbjct 5941709 GAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 5941650 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| |||||||||||||| || ||||| || | | ||||||||| || Sbjct 5941649 CTCGAGCTGCTTT--CCGGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTTA 5941592 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| || |||||| | || | |||| ||| || |||||||| || || Sbjct 5941591 TCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACTTCAAGTGTGATG 5941532 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||| ||||||| |||||| Sbjct 5941531 GTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || || ||||||||||| || | | || | || || || | Sbjct 5941197 CAAG-TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCGA 5941139 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || | |||||| || | | ||||||||||| ||||| Sbjct 5941138 GCTGCTTT--CCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 5941081 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||||| | || | | | || ||| ||| || || || || |||||||| Sbjct 5941080 GATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTT 5941021 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || || ||||||| ||||| Sbjct 5941020 TCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| | || ||||| || | | |||||| ||||| ||||| || || Sbjct 12978382 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 12978441 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | | || ||| ||| ||||| || |||||||| || ||||| ||| Sbjct 12978442 TTGACATTCTCAATGGTATCGGAAGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 12978501 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| ||||| Sbjct 12978502 GTCTTGACGAAGATTTGCAT 12978521 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||||||||| || || || ||||||||||| || | | || | || || Sbjct 5942446 GAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 5942387 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || |||||||| || | ||||| || | | ||||||||||| Sbjct 5942386 TTCGAGCTGCTTT--CCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTG 5942329 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || || |||| | | | || || || ||||| || || || Sbjct 5942328 TCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATG 5942269 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||||| ||||||| |||||| Sbjct 5942268 GTCTTTCCGATAAGAGTCTTGACGAAGATTTGCATT 5942233 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||| || || || || || ||||| ||||| || | | || Sbjct 5942958 CTGAGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTA 5942899 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||||| || || ||||| ||||||||||| |||| | ||||| || | | ||| Sbjct 5942898 CGGCCATCCTCGAGTTGCTTT--CCGGCGAAGATCAAGCGT-TGCTGATCTGGTGGGATA 5942842 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 ||||| || ||||| || || || || |||| | |||| ||| || || || Sbjct 5942841 CCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCG 5942782 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || |||||||| ||||||| ||||||| Sbjct 5942781 AGCGTGATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCATT 5942737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820696516697