Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 196 1e-44 seq2 87.8 4e-12 >seq3 Length=13783801 Score = 196 bits (216), Expect = 1e-44 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || || |||||||||||||| || | Sbjct 5942232 CCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAG 5942173 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| ||||| || ||||||||||||||||| ||||| || || Sbjct 5942172 AGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 5942113 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||||||||| || || ||| | || |||||||| |||||||| || Sbjct 5942112 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACC 5942053 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 5942052 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| || ||||| | || || |||||||||||||| || | Sbjct 5943698 CCTCCGCGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGAT 5943639 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || ||||||||||||||||| || || || Sbjct 5943638 AGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGG 5943579 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || ||||| || ||||| || | || || ||||||||||||||||| Sbjct 5943578 ATTCCCTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACC 5943519 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| || || || ||||||||||| ||||| |||||||| Sbjct 5943518 TCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || |||| ||| | || ||| || ||||| |||||||| | ||| || ||| Sbjct 5942955 AGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTACGG 5942896 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| ||||| || ||||| |||||||| ||||| || || || ||||| || Sbjct 5942895 CCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCTTCT 5942836 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| || || ||| | || |||||||| |||||||| || ||||| ||| Sbjct 5942835 TTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTG 5942776 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || | |||||| ||||| ||||||||| Sbjct 5942775 ATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCATT 5942737 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || || || |||| ||| | || ||| || |||||||||||||| | Sbjct 5941724 ACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGA 5941665 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | | ||| || || || Sbjct 5941664 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGG 5941605 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || || ||||| ||||| || || || | ||||| ||||| ||||||||||| Sbjct 5941604 GATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGAC 5941545 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 5941544 TTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || || || |||| ||| | || ||| || |||||||||||||| | Sbjct 5942461 ACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGA 5942402 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || || || || || || ||||| | |||||| || || || Sbjct 5942401 AAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGG 5942342 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| || || ||| | ||||| || || || |||||||| Sbjct 5942341 AATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGAC 5942282 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||| ||||| ||||| || | | |||||| ||||| || |||||| Sbjct 5942281 TTCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCATT 5942233 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| |||| || | || ||| || |||||||||||||||| || |||||| Sbjct 5941208 AGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 5941149 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || ||||| || || || ||||| ||||| | ||| || || || ||||| || ||| Sbjct 5941148 CCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCC 5941089 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| ||||| || | ||||| || || ||||| || || || || ||| Sbjct 5941088 TTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTG 5941029 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || ||||| || ||||| Sbjct 5941028 ATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | ||| || || |||| ||| | || || ||||||||||||||||| | Sbjct 5943193 ACCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 5943134 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || || || |||||||| ||||| ||||| | | || || || || Sbjct 5943133 GAGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGG 5943074 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||||| || || || | ||||| || || || |||||||| Sbjct 5943073 GATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGAC 5943014 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 5943013 TTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5942966 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | ||| || || || || || |||||||||||||| ||||| || Sbjct 5941358 CCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCC 5941299 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| |||||||| ||||| || ||||| ||||| || |||||| Sbjct 5941298 TTGACGTTCTCGATCGTGTCGGAAGCTTCAACTTCAAGTGTGATGGTCTTTCCAGTCAAA 5941239 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || ||||||||| Sbjct 5941238 GTCTTGACAAAGATCTGCATT 5941218 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | ||| || || || || || || ||||||||||||||||| || Sbjct 5942601 CCGGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCC 5942542 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || || || |||||||||||||| ||||| ||||| || |||||| Sbjct 5942541 TTCACATTTTCGATGGTATCAGAGGCTTCGACTTCGAGGGTGATAGTCTTTCCAGTCAAA 5942482 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 5942481 GTCTTCACGAAGATTTGCAT 5942462 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| | ||| || || || || |||||||||||||||||||| || Sbjct 12978382 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 12978441 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || || ||||| ||||||||||| || || ||||||||||||| | Sbjct 12978442 TTGACATTCTCAATGGTATCGGAAGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 12978501 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 12978502 GTCTTGACGAAGATTTGCAT 12978521 Score = 118 bits (130), Expect = 2e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || ||||||||||||||||| || || || | ||||| ||||| || |||||| Sbjct 5941834 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCG 5941775 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 5941774 ACTTCGAGGGTGATGGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 5941725 Score = 118 bits (130), Expect = 2e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || ||||||||||||||||| || || || | ||||| ||||| || |||||| Sbjct 5943303 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCG 5943244 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 5943243 ACTTCGAGGGTGATGGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 5943194 >seq2 Length=15279421 Score = 87.8 bits (96), Expect = 4e-12 Identities = 306/470 (65%), Gaps = 12/470 (3%) Strand=Plus/Minus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 || |||||| | |||| |||||| ||||| || || || || || || ||||| || Sbjct 11878362 GGATTGTAATTAGGAATGTTCGTGGACCATCCAGTACCGATGCCTTGAGCTCCATTGACG 11878303 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | || ||||| ||| ||| |||| |||||||| | | || || ||| Sbjct 11878302 AGTACCATTGGAATAATCGGGCAATACCATTCTGGCTCAATACGCTGATTTTCTTCATAA 11878243 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGT--CTGAGGATTCA 273774 ||| | | | | ||||| | | ||| | | || || ||| || || Sbjct 11878242 AGGAAACGAAGGACATTGTCATCGTGAGCCGGGAAGAGTGTACGAGTGACTGGCGA--CA 11878185 Query 273775 GTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAA 273834 ||| ||||| ||||| | || ||| |||||| |||||||| || | | ||||| Sbjct 11878184 GTTGAGTGAAGATGTAACGAGCTGAAGCACTGTCCTTTCCACCTTGGAGACGAGTACCAA 11878125 Query 273835 ACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||| || || || ||| ||| ||||||||| || |||||||| ||||| | || Sbjct 11878124 ACTGTCCGATTGGAAGAAGCAGGTTGATGTTGTTGGAGCCAACGTAATCTTGAGCGAGAT 11878065 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 |||| || || ||| ||| || || ||||| || || || ||| |||| | Sbjct 11878064 TCACAATTGTTCCCATAAGCGACTGTTCTCCGTGATGGTAAGCAGAAATTTCAGCGACAG 11878005 Query 273955 AACCACTGAACTGAGCAACCTTCACATC--GCTCGTCAAGTTTCGCTTGAATG-CG-GAA 274010 ||| || ||||| || || || || ||| ||| | || ||||| || ||| Sbjct 11878004 CTCCAGCCAATTGAGCTACTTTGACTTCACGCTTGTCTGCTCTC--TTGAAGCACGCGAA 11877947 Query 274011 TACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060 | ||| ||||||||| |||||||| ||||| || | ||||||| Sbjct 11877946 GAGAAC--CTTCCGCTGTCCTGGCTTGAAACCATCCACAAGGCATGGAAT 11877899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739106120578