Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 179 9e-40 >seq3 Length=13783801 Score = 179 bits (198), Expect = 9e-40 Identities = 164/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| | ||||| || ||||||||||| || ||| ||| || Sbjct 5942237 CAAATCTTCGTCAAGACTCTTATCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCCGAT 5942296 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||| |||||||| ||||| || |||||| Sbjct 5942297 ACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCAGCAA 5942356 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||||||||| || | || ||| | || || ||| || Sbjct 5942357 CGTCTCATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACAACATC 5942416 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || |||||||| || ||| | ||| Sbjct 5942417 CAGAAGGAATCAACTCTTCATTTGGTT 5942443 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || ||||| |||||||||||| || ||| Sbjct 5942741 CAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTCTGAC 5942800 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||| || ||||||||||| ||||| || || |||||| Sbjct 5942801 ACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAGCAA 5942860 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || ||||| ||||| | || ||| | || || || || Sbjct 5942861 CGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACAATATC 5942920 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || |||||||| || ||| | || | | |||||| Sbjct 5942921 CAGAAGGAATCAACCCTCCATTTGGTGCTCCGTCTCAGA 5942959 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||| || || || ||| || ||| Sbjct 5941500 CAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCTTCCGAC 5941559 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||| || |||||||||||||| || || |||||| Sbjct 5941560 ACGATCGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAA 5941619 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||||| |||||||| || || | || ||| | || || ||| || Sbjct 5941620 AGACTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATC 5941679 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || |||||||| || ||| | ||| Sbjct 5941680 CAGAAGGAATCAACTCTTCATTTGGTT 5941706 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || |||||||| |||||||| |||||||| || || Sbjct 5940994 CAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCTTCCGAT 5941053 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || ||||| |||||||| || || || ||||| Sbjct 5941054 ACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 5941113 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| |||||||| || || | || || | || || ||| || Sbjct 5941114 CGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAACATC 5941173 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 5941174 CAGAAGGAATCTACTCTTCA-CTTGGTT 5941200 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||| || || || ||| ||| || Sbjct 5942969 CAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCTGAT 5943028 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||| ||||| ||||||||||| || || ||||| Sbjct 5943029 ACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAG 5943088 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||||||||||||||| |||||||| || | || || |||| || ||| || Sbjct 5943089 AGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAACATC 5943148 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 5943149 CAAAAGGAGTCTACTCTTCATTTGGTT 5943175 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||| || ||||||||||| || ||| ||| || Sbjct 5942465 CAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCCTCGAAGTCGAAGCCTCTGAT 5942524 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || ||||| ||||||||||| || || ||||| Sbjct 5942525 ACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAG 5942584 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| ||||| Sbjct 5942585 CGTCTTATCTTTGCCGG 5942601 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||||||||| || ||| ||| ||| Sbjct 5943197 CAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCCGAC 5943256 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| |||||||| || || || ||||| Sbjct 5943257 ACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 5943316 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||| ||||| || Sbjct 5943317 AGACTTATTTTCGCTGG 5943333 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || ||||| || || || ||| || ||| Sbjct 5941222 CAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTTGAAGTTGAAGCTTCCGAC 5941281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| |||||||| ||||| || |||||||| || || ||||| Sbjct 5941282 ACGATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAG 5941341 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 5941342 CGTCTTATCTTTGCTGG 5941358 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||||||||| || ||| ||| ||| Sbjct 5941728 CAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCCGAC 5941787 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| |||||||| || || || ||||| Sbjct 5941788 ACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 5941847 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||| || || || Sbjct 5941848 AGACTTATTTTTGCTGG 5941864 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || || || Sbjct 12978518 CAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCTTCCGAT 12978459 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| || ||||| || |||||||| || || |||||| Sbjct 12978458 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAA 12978399 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 12978398 AGATTGATCTTCGCCGG 12978382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731092040358