Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=13783801 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| ||||| || |||||||| |||| ||||||||||| |||||||| Sbjct 5941181 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 5941122 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || ||||| || || | |||| | ||||||| | || | || |||| || Sbjct 5941121 ATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGT-CTTGGATCTTGGCTTTGACATT 5941063 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || ||| | ||||||||||| || || ||||| || |||| ||| || || Sbjct 5941062 TTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGAC 5941003 Query 41851 GAAAATCTGCATG 41863 ||| || |||||| Sbjct 5941002 GAAGATTTGCATG 5940990 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || || |||||||| ||||| ||||| || |||||||| |||| ||| Sbjct 5942442 ACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCG 5942383 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| || || || || || || | |||| | ||||||||| || Sbjct 5942382 AGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCC-TG 5942324 Query 41774 ATTTTTTG-CTTCA 41786 | | || | ||||| Sbjct 5942323 AATCTTGGCCTTCA 5942310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303959548400