Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq17868 89.7 4e-13 >seq17868 Length=20976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || ||||| || || || || || ||| ||| || | Sbjct 6431 AATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTC 6490 Query 29021 AGAGACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || || | | || | | ||||||||| || || || ||||| | || ||| Sbjct 6491 CGACACAATTGA-GAACGTGAAAGCAAAAA-TTCAAGACAAGGAAGGAATCCCACCAGAC 6548 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| || || || ||||||||| || || |||| ||| Sbjct 6549 CAGCAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTCCGACTAC 6608 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||||||| || |||||| |||| | || | ||||||| Sbjct 6609 AATATTCAAAAGGAATCCACACTTCACTTGGTTCTCCGCCTCAGAGGAGG 6658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428237768768135