Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17868 147 2e-30 seq17418 114 1e-20 >seq17868 Length=20976 Score = 147 bits (162), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| |||| || || ||| | Sbjct 6203 AATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTC 6262 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| |||||| || || | |||||||| || || || | || || Sbjct 6263 CGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCA 6322 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 6323 GCAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 6382 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 6383 CATCCAGAAGGAGTCGACACTCCACCTCGTG 6413 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || | || || || |||||||| | || ||||||||| | Sbjct 7391 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTC 7450 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| |||||| || || | ||||| || || ||||| | || || Sbjct 7451 CGACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 7510 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| |||| ||| || |||||||| || |||| ||||| ||| ||||||||| Sbjct 7511 GCAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTACAA 7570 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 7571 CATCCAGAAGGAGTCAACTCTCCACCTTGTG 7601 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || ||||||||| | Sbjct 7619 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAAGTCGAAGCCTC 7678 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| | |||| || || | ||||| ||||| ||||| | ||||| Sbjct 7679 CGACACAATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCGCCAGACCA 7738 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | ||| || |||||||| || || | ||||| ||| |||||||| Sbjct 7739 GCAGAGACTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTACAA 7798 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 7799 CATCCAGAAGGAGTCGACACTCCACCTTGT 7828 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||| |||||| |||| || || ||| || Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | ||||| || || || || | || ||| Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||||| ||| || || ||||| || || | ||||||||| ||| || ||| Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || || || ||| Sbjct 6156 ATCCAGAAGGAGTCAACTCTCCACCTTGTG 6185 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || | || || ||||| |||||| | || |||||||| | Sbjct 8122 AATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGAAGCATC 8181 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | ||||| |||||| || || | ||||| ||||| || ||| | || | Sbjct 8182 CGACACCATCGAAAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATC 8240 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || ||||| || || | || |||||| |||||||| Sbjct 8241 AGCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACA 8300 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||| || || |||| || || || ||| Sbjct 8301 ACATCCAAAAAGAATCCACTCTTCACCTTGTG 8332 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || || || ||||| | || || || || | Sbjct 6659 AATGCAAATTTTCGTGAAGACCCTCACTGGAAAGACTATCACTTTGGAAGTTGAGGCATC 6718 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||||| || || | ||||| || || ||||| | |||| Sbjct 6719 AGACACTATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACC 6777 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| |||| |||| ||| || || ||||| || || | ||||||||| ||||| | Sbjct 6778 AGCAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCTCGGACTATA 6837 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||| ||| | || || ||||| ||| Sbjct 6838 ACATCCAGAAAGAGTCAACTCTCCATCTTGTG 6869 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || | || || || |||||||| | || ||||| ||| | Sbjct 6887 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTC 6946 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| |||| | ||||| | ||||||||||| ||||| | ||||| Sbjct 6947 CGACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCA 7006 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| || || || |||| || | |||||||| |||||||| Sbjct 7007 ACAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAA 7066 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || |||||| | || || ||||| || Sbjct 7067 CATTCAAAAGGAGTCGACACTCCATCTCGT 7096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || || || Sbjct 7848 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGGCATCC 7907 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||||||||| ||||| | |||||| Sbjct 7908 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 7967 Query 40810 CAACGACTCAT 40820 || ||||||| Sbjct 7968 CAGAGACTCAT 7978 >seq17418 Length=39954 Score = 114 bits (126), Expect = 1e-20 Identities = 358/562 (64%), Gaps = 56/562 (10%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||||||||| | ||||| |||||||| |||||||| || || ||| ||| || | | Sbjct 1281 TACAAAAAGGCAGTAGCGTCATTCTGGACGGTCGAGGAAGTCGATCTGGGCAAAGATATG 1222 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 | || |||||| |||| | | |||| | || ||| | || || |||||| Sbjct 1221 AATGATTGGGAGAAGATGAATGGTGATGAGCAATACTTTATCTCACGAGTTCTCGCCTTT 1162 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT---------------------- 116805 ||||| || ||| || |||||||| |||||| |||| Sbjct 1161 TTCGCTGCTTCCGATGGAATCGTCAATGAGAATTTGGTAAATACGACTTAAAATTTTCAG 1102 Query 116806 --------------------NGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 ||||| ||| | | || ||| | || | ||||| || Sbjct 1101 TTTAAAAGTATTGTTCAGTGTGAGCGCTTCTCGAACGAAGTGAAAGTATCAGAGGCCCGA 1042 Query 116846 TGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC 116905 | |||||| || || || |||||||| ||||| | |||||||||||||| |||| ||| Sbjct 1041 TTCTTCTATGGATTCCAAATCGCCATCGAGAATATTCACTCGGAAATGTACTCGAAGCTC 982 Query 116906 ATCGACACGTACGTGCGCTCTTCGGA--GGAGAAGCTCCGTTTGTTGAACGCCA---TCG 116960 ||||| |||||| | || || | ||| | | || | ||||| | ||| Sbjct 981 ATCGAGACGTACATTCG--AGACGAAACAGAGCGTCACACACTGCTTAACGCAATTTTCG 924 Query 116961 AGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020 | | | || | |||| |||||||||| ||||| || || ||||| | | || Sbjct 923 A---GTTTGAGTTCATCAAGAAGAAGGCCGACTGGGCTCTCCGTTGGATTTCGGACAAGA 867 Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGG 117080 | || | || | |||| | || | || ||||| || ||||| || |||| ||| | Sbjct 866 AAGCGTCATTTGCCGAGAGACTTATCGCGTTCGCTGCTGTCGAAGGAATCTTTTTTAGTG 807 Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACT--TT 117138 | ||||||| |||| |||||||| || || || || |||||||| || || ||| || Sbjct 806 GATCTTTCGCCTCCATTTTTTGGCTTAAAAAGCGTGGGCTCATGCCAGGGCTCACTCATT 747 Query 117139 CAGCAACGAGCTCATCTCCAGG 117160 | ||||| || || || ||| Sbjct 746 C--TAACGAACTGATTTCTAGG 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515098014003920