Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq17868 93.3 6e-14 >seq17868 Length=20976 Score = 93.3 bits (102), Expect = 6e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| | || || || || || || | || | ||||| Sbjct 6431 AATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTC 6490 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || | ||| ||||||||||| || ||||| || ||||| || || Sbjct 6491 CGACACAATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCA 6550 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| || || ||||| ||||| || | || ||| | || ||||| || || || Sbjct 6551 GCAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTCCGACTACAA 6610 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||| ||||| || | || |||||| | || | |||| || || ||| || Sbjct 6611 TATTCAAAAGGAATCCACACTTCACTTGGTTCTCCGCCTCAGAGGAGGAATGCAAATTT 6669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755278307305600